PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G107900.1.p
Common NameGLYMA_20G107900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 431aa    MW: 49756.8 Da    PI: 8.7205
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G107900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.54.3e-17214305295
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                          f  ++++++  + ++v+p +f++e ++k++    +tl  ++ r W vk+  +++sg++ l++GW +Fvk+n+Lk g ++vF+ +++++ +
  Glyma.20G107900.1.p 214 FIREMHPSYIHKYIMVMPGNFLTEDQQKEND--SVTLWISEERAWHVKFYTNRSSGQINLSTGWVDFVKDNNLKIGNVCVFEQIKKTRIS 301
                          55566777777778********999877666..59999999********77999999*************************66544444 PP

                          .EEE CS
                   B3  92 lvvk 95 
                          ++v 
  Glyma.20G107900.1.p 302 FRVF 305
                          4444 PP
2B335.22.2e-113474191696
                          EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                          + +pkkf+++h+++  +  ++tl+    rsW+vkl  + ++ r  +t+G  +F +++++++gD++ F+l+++++f + v+v
  Glyma.20G107900.1.p 347 MNVPKKFIRNHEMD--GINEVTLQV-GKRSWNVKL--DCYG-R--FTSGLHDFMSQHNVEAGDVIHFELIDKKKFVFQVRV 419
                          789********666..333677665.78*******..6665.4..89***********************98999555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.00321196IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.9E-131696IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-1517103IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-71795IPR003340B3 DNA binding domain
CDDcd100172.38E-81994No hitNo description
PROSITE profilePS508639.9252096IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.0E-21206308IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-21207308IPR015300DNA-binding pseudobarrel domain
CDDcd100174.20E-14212308No hitNo description
PROSITE profilePS5086313.437213310IPR003340B3 DNA binding domain
PfamPF023621.6E-14213307IPR003340B3 DNA binding domain
SMARTSM010190.0039214310IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.3E-13332419IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.642332421IPR003340B3 DNA binding domain
SuperFamilySSF1019361.47E-12334426IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3E-7335421IPR003340B3 DNA binding domain
CDDcd100172.36E-8345421No hitNo description
PfamPF023622.5E-8347418IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MSFGLPSNKG FGKEDNCNRI PRSFVNKCWE GISNPVLLLL PNGVEWKVKW KKLDADILLI  60
EDWKEFAEFC SLDKDHLLVF EYLRKSQFLV VIFDQNGLEM EYPLMGGTLD GDEKGNSLCQ  120
HKRAKSPLPF SSSIKKVKGK TLTSYPSHGV RTERAQSQRT KVEFSKEFLA EDLERGGRGR  180
GMMNAKRRCS NSNALKSSTA LERAKAFRSE NPFFIREMHP SYIHKYIMVM PGNFLTEDQQ  240
KENDSVTLWI SEERAWHVKF YTNRSSGQIN LSTGWVDFVK DNNLKIGNVC VFEQIKKTRI  300
SFRVFIFRDG EESSPSNFSD SEFRGCNNEV SENHFTLSIK PCQFYCMNVP KKFIRNHEMD  360
GINEVTLQVG KRSWNVKLDC YGRFTSGLHD FMSQHNVEAG DVIHFELIDK KKFVFQVRVT  420
RCISIDFELL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G107900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020211029.21e-149B3 domain-containing transcription factor VRN1-like
TrEMBLA0A0R0ELZ50.0A0A0R0ELZ5_SOYBN; Uncharacterized protein
STRINGGLYMA20G24211.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14649515
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-25B3 family protein