PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G097900.1.p
Common NameGLYMA_20G097900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 260aa    MW: 29630.5 Da    PI: 8.0413
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G097900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.51.5e-13130173347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rW++eE+ l++++ +++G+g+W  I+r +  +R + q+ s+ qky
  Glyma.20G097900.1.p 130 RWSEEEHRLFLHGLQKYGKGDWINISRIIK-TRNPTQVASHAQKY 173
                          9****************************9.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.079125178IPR017930Myb domain
SuperFamilySSF466897.18E-16126178IPR009057Homeodomain-like
SMARTSM007171.7E-9127176IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-9129172IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-14129177IPR006447Myb domain, plants
CDDcd001679.56E-11130174No hitNo description
PfamPF002492.6E-11130173IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGENNNKFHC CGDDDGFDEP LYLKYPALQD LEWEGTLICL PPDLSSLSNN FTPKVLPLSM  60
SPPSETTVTR VPPMLPPVED ATYVQPNLQD QLSALQNINA NQVAPMWPGS QINHSLSRKG  120
SSSKSNECRR WSEEEHRLFL HGLQKYGKGD WINISRIIKT RNPTQVASHA QKYFLRQASS  180
NKGKRRNIHD MVLPDGPVPH RIYQQNGVSF RNLDGPITHH INHQNGVPFQ NLIMQELYEI  240
HLAVPHYINQ QNWVLRPMR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G097900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006583330.13e-32putative mediator of RNA polymerase II transcription subunit 12
RefseqXP_028238564.15e-32putative mediator of RNA polymerase II transcription subunit 12
TrEMBLA0A0R0E9B10.0A0A0R0E9B1_SOYBN; Uncharacterized protein
STRINGGLYMA07G08081.11e-31(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3677622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.16e-24MYB family protein