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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.20G088600.2.p | ||||||||
Common Name | GLYMA_20G088600, LOC100787583 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 199aa MW: 22189.7 Da PI: 9.2264 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.1 | 3.7e-09 | 43 | 90 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RR+r+N++f L ++l + + + +K +iL A++ +++L Glyma.20G088600.2.p 43 SKACREKLRRERLNERFCDLSSVLEPG---RPVRTDKPAILDDAIRVLSQL 90 6778**********************8...89*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.22 | 39 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.35E-5 | 43 | 95 | No hit | No description |
Pfam | PF00010 | 1.9E-6 | 43 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.3E-7 | 45 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.19E-11 | 45 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.6E-9 | 47 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MVKNKTTLLI CVSTEIDIPG DAVACQENTK KRGRTDSCFK AGSKACREKL RRERLNERFC 60 DLSSVLEPGR PVRTDKPAIL DDAIRVLSQL KTEAQELKKT NEKLLEEIKC LKAEKNELRE 120 EKLVLKADKE RIEKQLKALP VAPAGFMAPP VAAAAAAYQA GVNKMAVYPN YGYIPMWQYL 180 PQSVRDTSHD HELRPPAA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.7248 | 0.0 | cotyledon| flower| leaf| root| somatic embryo| stem |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00102 | PBM | Transfer from AT4G14410 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.20G088600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094668 | 0.0 | BT094668.1 Soybean clone JCVI-FLGm-5P4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014628454.1 | 1e-144 | transcription factor bHLH104 isoform X2 | ||||
Swissprot | Q8L467 | 5e-76 | BH104_ARATH; Transcription factor bHLH104 | ||||
TrEMBL | A0A0R0E8T2 | 1e-143 | A0A0R0E8T2_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445F2E4 | 1e-143 | A0A445F2E4_GLYSO; Transcription factor bHLH104 isoform B | ||||
STRING | GLYMA20G22010.1 | 1e-134 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14410.2 | 3e-54 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.20G088600.2.p |
Entrez Gene | 100787583 |