PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G082300.1.p
Common NameGLYMA_20G082300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 261aa    MW: 30159.1 Da    PI: 9.9404
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G082300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.81.4e-192370148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd llv++v+++G g+W+++ar  g++R +k+c++rw +yl
  Glyma.20G082300.1.p 23 KGPWTAEEDRLLVEYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 70
                         79********************************************97 PP
2Myb_DNA-binding51.72e-1676120147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg  T +E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  Glyma.20G082300.1.p  76 RGQITSQEESIILELHTRWGNR-WSTIARSLP-GRTDNEIKNYWRTH 120
                          7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.6941874IPR017930Myb domain
SuperFamilySSF466899.17E-3022117IPR009057Homeodomain-like
SMARTSM007176.5E-172272IPR001005SANT/Myb domain
PfamPF002498.0E-182370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-242477IPR009057Homeodomain-like
CDDcd001673.67E-122570No hitNo description
PROSITE profilePS5129418.91575125IPR017930Myb domain
SMARTSM007172.2E-1375123IPR001005SANT/Myb domain
PfamPF002494.3E-1376120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-2378124IPR009057Homeodomain-like
CDDcd001675.39E-980121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MYWGEVMAGH MGRGVIEEQV WRKGPWTAEE DRLLVEYVRL HGEGRWNSVA RLAGLKRNGK  60
SCRLRWVNYL RPDLKRGQIT SQEESIILEL HTRWGNRWST IARSLPGRTD NEIKNYWRTH  120
FKKKAKRPSD AVEKARNRLL RKQQFHQQQQ QQLQQQKAQQ QLQFNFDVKG IMAFLEDNSH  180
KAPYISQSRL VVNMHQNTTE EQGYLYSMPN GNCSASSALE TSAEEVLWDG LWNIDDVHGN  240
FSVASAASKV GLYNLVAPFC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-27512510128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G082300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0967530.0BT096753.1 Soybean clone JCVI-FLGm-15B2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028221394.10.0transcription factor MYB59-like isoform X1
TrEMBLA0A445F2B30.0A0A445F2B3_GLYSO; Transcription factor MYB2
TrEMBLI1NEL90.0I1NEL9_SOYBN; Uncharacterized protein
STRINGGLYMA20G20980.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.12e-79myb domain protein 305