PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.20G076100.1.p | ||||||||
Common Name | GLYMA_20G076100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 405aa MW: 47343.6 Da PI: 10.0288 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 31.9 | 4.4e-10 | 4 | 65 | 31 | 88 |
FAR1 31 rtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 + fvCskeg+r +++k ++ +++r+ tr gC+ +++ k+ ++gk+e++++++ H+H+ Glyma.20G076100.1.p 4 KYFVCSKEGYRPNKTKVveqsVSTIKSRRSLTREGCNVNVVFKLVEEGKYELIRFHETHTHT 65 57*********9999986665556677999**************************998885 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.4E-7 | 5 | 65 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 405 aa Download sequence Send to blast |
MHLKYFVCSK EGYRPNKTKV VEQSVSTIKS RRSLTREGCN VNVVFKLVEE GKYELIRFHE 60 THTHTHALAS PMKRQFLRSA RKVNLVHKNL MLAYNRANIC ASFTGINHHR QCVTFGAGFL 120 AYEKIDSFIW LFAKFCMRHI MKKNSEKVGV SLNVNKKFYN HFKSCVWGLK TQNDFESTWK 180 AIMVRFKLEE NDWLSHMYDI QSMLIPAYFR DMFLAGILRT TSRSKKKHRR DIYTHENLYI 240 FQKKSWIACV DCGVENNQEQ DGMEILHVID NNEANGRLRE VVWKGLTEIP SNYTMNRWTK 300 LANRKPVFDI TVNVLNTFSK PKNESYFYNI WGHFFRCMDK AEQHKEKLLL VMNGVVNIEN 360 QLAEYERDSK QTKTDDLETF VGSSIPKEVG ILPPQFSKTK GSGK* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.20G076100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024636370.1 | 1e-105 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A0R0EJJ7 | 0.0 | A0A0R0EJJ7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G18792.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14928 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-16 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.20G076100.1.p |