PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.20G076100.1.p

Common Name

GLYMA_20G076100

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 405aa MW: 47343.6 Da PI: 10.0288

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.20G076100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	31.9	4.4e-10	4	65	31	88
FAR1 31 rtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 + fvCskeg+r +++k ++ +++r+ tr gC+ +++ k+ ++gk+e++++++ H+H+ Glyma.20G076100.1.p 4 KYFVCSKEGYRPNKTKVveqsVSTIKSRRSLTREGCNVNVVFKLVEEGKYELIRFHETHTHT 65 57*******9999986665556677999************************998885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-7	5	65	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MHLKYFVCSK EGYRPNKTKV VEQSVSTIKS RRSLTREGCN VNVVFKLVEE GKYELIRFHE 60 THTHTHALAS PMKRQFLRSA RKVNLVHKNL MLAYNRANIC ASFTGINHHR QCVTFGAGFL 120 AYEKIDSFIW LFAKFCMRHI MKKNSEKVGV SLNVNKKFYN HFKSCVWGLK TQNDFESTWK 180 AIMVRFKLEE NDWLSHMYDI QSMLIPAYFR DMFLAGILRT TSRSKKKHRR DIYTHENLYI 240 FQKKSWIACV DCGVENNQEQ DGMEILHVID NNEANGRLRE VVWKGLTEIP SNYTMNRWTK 300 LANRKPVFDI TVNVLNTFSK PKNESYFYNI WGHFFRCMDK AEQHKEKLLL VMNGVVNIEN 360 QLAEYERDSK QTKTDDLETF VGSSIPKEVG ILPPQFSKTK GSGK*

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MHLKYFVCSK EGYRPNKTKV VEQSVSTIKS RRSLTREGCN VNVVFKLVEE GKYELIRFHE  60
THTHTHALAS PMKRQFLRSA RKVNLVHKNL MLAYNRANIC ASFTGINHHR QCVTFGAGFL  120
AYEKIDSFIW LFAKFCMRHI MKKNSEKVGV SLNVNKKFYN HFKSCVWGLK TQNDFESTWK  180
AIMVRFKLEE NDWLSHMYDI QSMLIPAYFR DMFLAGILRT TSRSKKKHRR DIYTHENLYI  240
FQKKSWIACV DCGVENNQEQ DGMEILHVID NNEANGRLRE VVWKGLTEIP SNYTMNRWTK  300
LANRKPVFDI TVNVLNTFSK PKNESYFYNI WGHFFRCMDK AEQHKEKLLL VMNGVVNIEN  360
QLAEYERDSK QTKTDDLETF VGSSIPKEVG ILPPQFSKTK GSGK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.20G076100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024636370.1	1e-105	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A0R0EJJ7	0.0	A0A0R0EJJ7_SOYBN; Uncharacterized protein
STRING	GLYMA20G18792.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14928	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-16	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Glyma.20G076100.1.p