PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ZF-HD

Protein Properties

Length: 213aa MW: 24083.4 Da PI: 7.9443

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.20G075800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	77.6	1.7e-24	59	113	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 + +Y+eClkNh +++G+h++DGC f+p g+egt +alkC C+ HRnFHR+e+ Glyma.20G075800.1.p 59 NEKYHECLKNHTVKIGSHTLDGCIKFLPL-GKEGTLDALKCIVCNYHRNFHRKETP 113 679***********************9.999******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	7.0E-16	61	112	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	4.6E-24	61	112	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.4E-21	61	111	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	20.618	62	111	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	5.97E-13	154	210	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.4E-20	154	205	IPR006455	Homeodomain, ZF-HD class
Gene3D	G3DSA:1.10.10.60	1.7E-22	155	211	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MEFKQHVETE LRMPVASASH EDFGIPPSSQ GEEEPVAAAI PVAIPMTPTP PTMSQNNNNE 60 KYHECLKNHT VKIGSHTLDG CIKFLPLGKE GTLDALKCIV CNYHRNFHRK ETPNDTYPES 120 YHHHPPLPFT AYYRAPVGYP HVQGQQCTTL ALPSRFTQEQ KEKMLAFGEK LGWRIHKHNE 180 SVVQEFCAQT SVQPHVLKVW MHNNKHTLGK KS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	8e-22	148	207	16	75	ZF-HD homeobox family protein
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.20G075800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235141	1e-154	AC235141.1 Glycine max strain Williams 82 clone GM_WBa0071B20, complete sequence.
GenBank	AC235161	1e-154	AC235161.1 Glycine max strain Williams 82 clone GM_WBa0098D20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003556882.1	1e-123	zinc-finger homeodomain protein 2
Swissprot	Q9SB61	2e-49	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A0R0EI55	1e-158	A0A0R0EI55_SOYBN; Uncharacterized protein
STRING	GLYMA20G18520.1	1e-123	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	2e-51	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Glyma.20G075800.1.p

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]