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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.20G075600.1.p | ||||||||
Common Name | GLYMA_20G075600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ZF-HD | ||||||||
Protein Properties | Length: 256aa MW: 28414.2 Da PI: 7.4126 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 74.1 | 2e-23 | 59 | 113 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 + +Y+eClkNh +++G h++DGC f+p geegt +alkC C+ HRnFHR+e+ Glyma.20G075600.1.p 59 NEKYHECLKNHTVKTGVHTLDGCIKFLPL-GEEGTLDALKCLVCNYHRNFHRKETP 113 578*************************9.999********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.6E-23 | 61 | 112 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.3E-20 | 61 | 111 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 7.0E-16 | 61 | 112 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 20.196 | 62 | 111 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.73E-14 | 173 | 242 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.0E-24 | 177 | 244 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.7E-21 | 186 | 241 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MEFKHHEKTE LSMPAATASH NDFGIPPSSQ GEEEPVAAAI PVAIPVTPTP PTLAQNNDNE 60 KYHECLKNHT VKTGVHTLDG CIKFLPLGEE GTLDALKCLV CNYHRNFHRK ETPNDTYLVP 120 YYHHSPLPLA AYYGEQMGYP RVQGQQCTTL ALPSRSRGSG GAQSSREDME AVSDPTSATP 180 HGGSSKKRFR TRFTLEQKEK MLAFAEKLGW RILKNDESVV QEFCAQTSIL PHVLKVWVHN 240 NMHTLVTIIA TTIRL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 5e-22 | 185 | 244 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.20G075600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235141 | 0.0 | AC235141.1 Glycine max strain Williams 82 clone GM_WBa0071B20, complete sequence. | |||
GenBank | AC235161 | 0.0 | AC235161.1 Glycine max strain Williams 82 clone GM_WBa0098D20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003556882.1 | 0.0 | zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A0R0E9A5 | 0.0 | A0A0R0E9A5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G18520.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Representative plant | OGRP91 | 16 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 5e-51 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.20G075600.1.p |