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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.20G070100.1.p | ||||||||
Common Name | GLYMA_20G070100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 210aa MW: 23854 Da PI: 8.0974 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58 | 2.3e-18 | 113 | 163 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+ +r++lg+f+++ +Aaka++ a+ k++g Glyma.20G070100.1.p 113 RYRGVRRRP-WGKFAAEIRDPTRK--GTRVWLGTFDSEIDAAKAYDCAAFKMRG 163 8********.**********8542..4**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.20E-30 | 112 | 171 | No hit | No description |
Pfam | PF00847 | 6.2E-13 | 113 | 163 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-22 | 113 | 173 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.8E-35 | 113 | 177 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.316 | 113 | 171 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-31 | 113 | 172 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-13 | 114 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-13 | 153 | 173 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MTTAEETSNL DLIRQHLLGE NIISDSSFFS NLLHHPMKLE APSSPEFDFT SYISDNTSFF 60 TFLEGYDLMA DMKFVDSDNT IPSKEVKKCN ISPEPLVSSK EKPKKLEYDK AKRYRGVRRR 120 PWGKFAAEIR DPTRKGTRVW LGTFDSEIDA AKAYDCAAFK MRGQKAILNF PLEAGLSDPK 180 PNSCGRKRRR ESHDHELELP QVQVHHGVS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-27 | 110 | 172 | 2 | 64 | ATERF1 |
3gcc_A | 1e-27 | 110 | 172 | 2 | 64 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 189 | RKRRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.16700 | 0.0 | cotyledon| leaf| pod |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.20G070100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT089482 | 0.0 | BT089482.1 Soybean clone JCVI-FLGm-2G11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001235847.2 | 1e-156 | DNA-binding domain-containing protein | ||||
Refseq | XP_028220065.1 | 1e-156 | ethylene-responsive transcription factor ERF107-like | ||||
TrEMBL | A0A0B2RHZ0 | 1e-155 | A0A0B2RHZ0_GLYSO; Ethylene-responsive transcription factor ERF106 (Fragment) | ||||
TrEMBL | A0A445F1S8 | 1e-155 | A0A445F1S8_GLYSO; Ethylene-responsive transcription factor ERF106 | ||||
TrEMBL | I1NEC9 | 1e-155 | I1NEC9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G16920.1 | 1e-156 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5257 | 30 | 56 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07580.1 | 1e-42 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.20G070100.1.p |