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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.20G068900.1.p | ||||||||
Common Name | GLYMA_20G068900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 186aa MW: 21742.6 Da PI: 6.7078 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.2 | 2.1e-09 | 96 | 139 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT+eE+ ++ + +++ +W++I++++ +t+ q++s+ ++ Glyma.20G068900.1.p 96 WTKEEHRSFLLGLEEYKESRWEKISEKFVPSKTPTQVVSHAKNF 139 *****************************9**********9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.101 | 88 | 144 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.99E-12 | 89 | 143 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.7E-9 | 91 | 141 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 6.2E-7 | 92 | 142 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-8 | 95 | 138 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.9E-7 | 96 | 138 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.43E-8 | 96 | 140 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MYDYHFDEEE IEELLKHKDE PCLNVILDSL DLQQMVLASQ VPTKPLEETF YSIASKQVHV 60 PSSYPHHLLS QNTESNHVML SSGSSQSIHS KKYIHWTKEE HRSFLLGLEE YKESRWEKIS 120 EKFVPSKTPT QVVSHAKNFF KWKNAPKKER KRRSIHETTL DDIDMIVTPH IDQHNWLPPP 180 PNFAV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.20G068900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006606790.1 | 1e-107 | transcription factor DIVARICATA | ||||
TrEMBL | A0A0R0E902 | 1e-133 | A0A0R0E902_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G45255.1 | 7e-53 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13860 | 4 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11280.2 | 3e-20 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.20G068900.1.p |