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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.20G068700.1.p | ||||||||
Common Name | GLYMA_20G068700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 349aa MW: 39266.7 Da PI: 8.2322 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.5 | 2.6e-07 | 34 | 78 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT e+ +l+ +a + + ++ +W+++a+++ g+ +++ ++ Glyma.20G068700.1.p 34 KWTSEDKKLFENALAVHDKDtpdQWHKVAKMIL-GKIVVDVIRKYK 78 8*******************************9.******999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 4.8E-7 | 31 | 83 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.85E-10 | 33 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.69E-6 | 34 | 80 | No hit | No description |
Pfam | PF00249 | 7.7E-6 | 34 | 79 | IPR001005 | SANT/Myb domain |
SMART | SM00717 | 18 | 167 | 216 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 6.0E-8 | 177 | 217 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 1.05E-6 | 177 | 217 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.45E-4 | 177 | 214 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MKWESITLSS PTPCTPNSNT NWLVMEDNNR SSTKWTSEDK KLFENALAVH DKDTPDQWHK 60 VAKMILGKIV VDVIRKYKEL EVDISNIETV LIPVPGYSSI ATSPFTLDWV NTHGYDGFKG 120 YGKRSSSLRP IEHERKKGVP RTEDEHKTGG WSLKLIGVWT RILYLEFELP FNVPCILFLL 180 GLKKYGKGDW TNICCNFVIT RTPTQVGSHA QKYFIRQLSG GKDKSRASIH DKTTVNLTET 240 ITTSSEDTNR STSPHVLSSN NSQILLLLHQ ELVFNGVAFD SNFAPCLVVA LFITLAMTLN 300 PGHERIFMSH YGANSFGVKI EGQNIHESSY LGPQTQNMVF QMQQSSQH* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.20305 | 0.0 | cotyledon| hypocotyl| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.20G068700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003519244.1 | 1e-175 | transcription factor DIVARICATA | ||||
TrEMBL | K7N1Z2 | 0.0 | K7N1Z2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G16630.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF36765 | 2 | 2 |
Representative plant | OGRP275 | 17 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 6e-68 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.20G068700.1.p |