PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G068700.1.p
Common NameGLYMA_20G068700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 349aa    MW: 39266.7 Da    PI: 8.2322
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G068700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.6e-073478345
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                         +WT e+ +l+ +a + + ++   +W+++a+++  g+   +++ ++ 
  Glyma.20G068700.1.p 34 KWTSEDKKLFENALAVHDKDtpdQWHKVAKMIL-GKIVVDVIRKYK 78
                         8*******************************9.******999997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.8E-73183IPR001005SANT/Myb domain
SuperFamilySSF466897.85E-103381IPR009057Homeodomain-like
CDDcd001675.69E-63480No hitNo description
PfamPF002497.7E-63479IPR001005SANT/Myb domain
SMARTSM0071718167216IPR001005SANT/Myb domain
TIGRFAMsTIGR015576.0E-8177217IPR006447Myb domain, plants
SuperFamilySSF466891.05E-6177217IPR009057Homeodomain-like
CDDcd001677.45E-4177214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MKWESITLSS PTPCTPNSNT NWLVMEDNNR SSTKWTSEDK KLFENALAVH DKDTPDQWHK  60
VAKMILGKIV VDVIRKYKEL EVDISNIETV LIPVPGYSSI ATSPFTLDWV NTHGYDGFKG  120
YGKRSSSLRP IEHERKKGVP RTEDEHKTGG WSLKLIGVWT RILYLEFELP FNVPCILFLL  180
GLKKYGKGDW TNICCNFVIT RTPTQVGSHA QKYFIRQLSG GKDKSRASIH DKTTVNLTET  240
ITTSSEDTNR STSPHVLSSN NSQILLLLHQ ELVFNGVAFD SNFAPCLVVA LFITLAMTLN  300
PGHERIFMSH YGANSFGVKI EGQNIHESSY LGPQTQNMVF QMQQSSQH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.203050.0cotyledon| hypocotyl| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G068700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003519244.11e-175transcription factor DIVARICATA
TrEMBLK7N1Z20.0K7N1Z2_SOYBN; Uncharacterized protein
STRINGGLYMA20G16630.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3676522
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.16e-68MYB family protein