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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.20G060400.1.p | ||||||||
Common Name | GLYMA_20G060400, LOC100796748 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | CO-like | ||||||||
Protein Properties | Length: 410aa MW: 44400.7 Da PI: 4.5679 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.4 | 4.5e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ +++++ +C+++ +lC +C + H+ H++ Glyma.20G060400.1.p 4 ICDFCGDQRSMVYCRSDAACLCLSCDRNVHSAnalskrHSR 44 7*****************************65677777765 PP | |||||||
2 | zf-B_box | 21.1 | 6.5e-07 | 46 | 88 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40 C++++++++ C + + lC++C +H g H+++ Glyma.20G060400.1.p 46 LLCERCNSQPAFVRCVEEKISLCQNCDWLGH-GtstssstHKRQ 88 57*****************************.547778888765 PP | |||||||
3 | CCT | 64.2 | 4e-22 | 352 | 395 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RYkeK+ktR F+Kk+rY+sRKa+A+ R RvKGrFvk+ Glyma.20G060400.1.p 352 RSNAVMRYKEKKKTRMFDKKVRYASRKARADVRRRVKGRFVKAG 395 899**************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.542 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.08E-6 | 4 | 47 | No hit | No description |
SMART | SM00336 | 5.7E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.717 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.94E-4 | 47 | 90 | No hit | No description |
SMART | SM00336 | 1.6 | 48 | 90 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 15.279 | 352 | 394 | IPR010402 | CCT domain |
Pfam | PF06203 | 3.3E-17 | 352 | 394 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MGYICDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLLCER CNSQPAFVRC 60 VEEKISLCQN CDWLGHGTST SSSTHKRQAI NCYSGCPSAA ELSSIWSFVL EIAAISESTC 120 EQELGLMSIN ENKCVGVPPE DQNVSGSDEV TDLPALNKSL VGASLMPESS SEPCILDQPA 180 GPTNECLPKL YCPATKCPAL SEDDNLYDDF NMDEVDLDLE NYEELFGMAL SHSEELFENG 240 GIDSLFGTKG MSAGDSNCQE AIAAEGSSVG QVNAMQPACS NAASADSILS TKTEPILCFT 300 GRQTQSNLSF SGVTGESSAG DYQDCGASSM LLMGEPPWFA PCPENSLQSA NRSNAVMRYK 360 EKKKTRMFDK KVRYASRKAR ADVRRRVKGR FVKAGDVYDY DPLSTTRSC* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.18735 | 0.0 | cotyledon| leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.20G060400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT097989 | 0.0 | BT097989.1 Soybean clone JCVI-FLGm-22F8 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006605598.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_006605599.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Swissprot | Q9SSE5 | 1e-155 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | K7N1D6 | 0.0 | K7N1D6_SOYBN; CONSTANS-like zinc finger protein | ||||
STRING | GLYMA20G07051.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4362 | 33 | 53 |
Representative plant | OGRP1375 | 13 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 1e-142 | CONSTANS-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.20G060400.1.p |
Entrez Gene | 100796748 |