PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 881aa MW: 99406.8 Da PI: 6.7045

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.20G053500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.6	3.1e-16	60	135	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYneYA+++GFs ++ +sk +ge + r+fvC eg +++ +++ C+a+++++++ ++kw+vtk+++eH+H ++ Glyma.20G053500.1.p 60 NFYNEYARHMGFSSKVGPYGRSKADGENMYREFVCGGEGLKKSPNES--------------CNAMIRIELKGQNKWVVTKFVKEHSHYMV 135 6*************************************9998777..............************************886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.4E-12	60	135	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.2E-28	275	366	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.14	553	589	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.0E-9	559	587	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.5E-6	564	591	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 881 aa Download sequence Send to blast
MDVQVINVEV SGHQTKADDG DAEPSDGEVN NAENYGSHVE DEISEPHMGM EFGSEDVAKN 60 FYNEYARHMG FSSKVGPYGR SKADGENMYR EFVCGGEGLK KSPNESCNAM IRIELKGQNK 120 WVVTKFVKEH SHYMVSSSKA HSRRPSKHFS SVGRTMPETY QGVGLVPSGV MYVSMDGNRV 180 SNQNTRGVKN IHTAAAERSH LVKNSTLMNY SVRPCSQNKT LGRDAHNLLE YFKKMQAENP 240 GFFYAIQLDE ENRMSNVFWA DARSRTAYSY YGDTVHLDTT YKVNQYRVPF APFTGVNHHG 300 QMVLFGCALI LDDSEASFLW LLKTFLTAMN DRQPISITTD QDRAMQTAVS QVFPQARHCI 360 SKWQILREGQ EKLAHVCLAH PNFQVELYNC INLTETIEEF ESSWNFILNK YELRGNDWLQ 420 SLYNARAQWV PAYFRDSFFA AISPTQGFDG SFFDGYVNQQ TTLPLFFRQY ERALESWIEK 480 EIEADFETVS TTPVLKTPSP MEKQAANLYT RKIFSKFQDE LVETFVYTAN RIEGDGPNST 540 FRVAKFEDDQ KAYMVTLNHS ELKANCSCQM FEYAGILCKH ILTVFTVTNV LTLPPHYILK 600 RWTRNAKNSA GLDEHTGESH AQESLTARYG NLCKEAIRYA EEGSVTVETY NAAISGLREG 660 VKKVANVKKS VAKVTPPNNQ ASGTAYDDRK TTPTLDTTPL LWPWQDEITR RFNLNDAGGP 720 VQSVADLNLP RMAPVSLHRD DGPSENVVVL PCLKSMTWVM ENRNSTPGNK VAVINLKLQD 780 YSRAPSAESE VKFHLSRVTL EPMLKSMAYI SEQLSTPANK VAVINLKLQD TETTSGESEV 840 KFQVSRDTLG AMLRSMAYIR EQLSHADDAQ SEPLSKKHRK *

Sequence ? help Back to Top

Protein Sequence Length: 881 aa Download sequence Send to blast

MDVQVINVEV SGHQTKADDG DAEPSDGEVN NAENYGSHVE DEISEPHMGM EFGSEDVAKN  60
FYNEYARHMG FSSKVGPYGR SKADGENMYR EFVCGGEGLK KSPNESCNAM IRIELKGQNK  120
WVVTKFVKEH SHYMVSSSKA HSRRPSKHFS SVGRTMPETY QGVGLVPSGV MYVSMDGNRV  180
SNQNTRGVKN IHTAAAERSH LVKNSTLMNY SVRPCSQNKT LGRDAHNLLE YFKKMQAENP  240
GFFYAIQLDE ENRMSNVFWA DARSRTAYSY YGDTVHLDTT YKVNQYRVPF APFTGVNHHG  300
QMVLFGCALI LDDSEASFLW LLKTFLTAMN DRQPISITTD QDRAMQTAVS QVFPQARHCI  360
SKWQILREGQ EKLAHVCLAH PNFQVELYNC INLTETIEEF ESSWNFILNK YELRGNDWLQ  420
SLYNARAQWV PAYFRDSFFA AISPTQGFDG SFFDGYVNQQ TTLPLFFRQY ERALESWIEK  480
EIEADFETVS TTPVLKTPSP MEKQAANLYT RKIFSKFQDE LVETFVYTAN RIEGDGPNST  540
FRVAKFEDDQ KAYMVTLNHS ELKANCSCQM FEYAGILCKH ILTVFTVTNV LTLPPHYILK  600
RWTRNAKNSA GLDEHTGESH AQESLTARYG NLCKEAIRYA EEGSVTVETY NAAISGLREG  660
VKKVANVKKS VAKVTPPNNQ ASGTAYDDRK TTPTLDTTPL LWPWQDEITR RFNLNDAGGP  720
VQSVADLNLP RMAPVSLHRD DGPSENVVVL PCLKSMTWVM ENRNSTPGNK VAVINLKLQD  780
YSRAPSAESE VKFHLSRVTL EPMLKSMAYI SEQLSTPANK VAVINLKLQD TETTSGESEV  840
KFQVSRDTLG AMLRSMAYIR EQLSHADDAQ SEPLSKKHRK *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.21856	0.0	pod

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.20G053500.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006605632.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	I1NE48	0.0	I1NE48_SOYBN; Uncharacterized protein
STRING	GLYMA20G11710.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	Glyma.20G053500.1.p
Entrez Gene	100786516

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]