PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.20G037100.2.p | ||||||||
Common Name | GLYMA_20G037100, LOC100815750 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SRS | ||||||||
Protein Properties | Length: 341aa MW: 36080.5 Da PI: 7.5825 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 212 | 1.5e-65 | 113 | 274 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstkl 91 gt++CqdCGnqakkdC+h+RCRtCCksrgfdC+thvkstWvpa++rrerq + aa+ a s+ a++ +k++r ++q+++++++ Glyma.20G037100.2.p 113 GGTSTCQDCGNQAKKDCSHRRCRTCCKSRGFDCSTHVKSTWVPASRRRERQLKGVAAAGAAVGSNgATSGAKKPRLV--ASQTTSHTSTS 200 57899*********************************************877666655555444367777777765..45555555555 PP DUF702 92 ssaeskkeletss..........lPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 ++++++++++t lP++v+++avf+cvrv+svdd ge+e+aYq++v+igGhvfkG+LydqG+e+ Glyma.20G037100.2.p 201 NNTTPPRSFDTGCspqdvgfkesLPSQVRAPAVFKCVRVTSVDDgGEDEYAYQAVVKIGGHVFKGFLYDQGVED 274 66777788887767889999999*********************899*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 5.2E-62 | 115 | 273 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 6.7E-27 | 117 | 159 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.9E-29 | 224 | 272 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MWPGVSRSFN YNLAPHHDIF VVAPASSFYH HHNDVVLSDP NNNNGSNNSN NPATAHGVNV 60 FPLLTATPCL ESEGIMGNIS HHRNRIQLWQ EHESSPPQQQ QGHMERDTCG DGGGTSTCQD 120 CGNQAKKDCS HRRCRTCCKS RGFDCSTHVK STWVPASRRR ERQLKGVAAA GAAVGSNGAT 180 SGAKKPRLVA SQTTSHTSTS NNTTPPRSFD TGCSPQDVGF KESLPSQVRA PAVFKCVRVT 240 SVDDGGEDEY AYQAVVKIGG HVFKGFLYDQ GVEDKEGYPN LSELHLSGGG GGNVTSGSDG 300 GRNGISSSSP MVDRSHDVYA ASGGGLLLGG SSNYGNHPIN * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.43871 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269|PubMed:7647564}. | |||||
Uniprot | TISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269|PubMed:7647564}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.20G037100.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025983159.1 | 0.0 | protein LATERAL ROOT PRIMORDIUM 1 | ||||
Refseq | XP_028220193.1 | 0.0 | protein LATERAL ROOT PRIMORDIUM 1-like | ||||
Swissprot | Q94CK9 | 5e-80 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | A0A445F0C8 | 0.0 | A0A445F0C8_GLYSO; Protein LATERAL ROOT PRIMORDIUM 1 isoform A | ||||
TrEMBL | K7N188 | 0.0 | K7N188_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G05015.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.2 | 8e-66 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Glyma.20G037100.2.p |
Entrez Gene | 100815750 |
Publications ? help Back to Top | |||
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