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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.20G037100.2.p |
| Common Name | GLYMA_20G037100, LOC100815750 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
SRS |
| Protein Properties |
Length: 341aa MW: 36080.5 Da PI: 7.5825 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.20G037100.2.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 212 | 1.5e-65 | 113 | 274 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstkl 91
gt++CqdCGnqakkdC+h+RCRtCCksrgfdC+thvkstWvpa++rrerq + aa+ a s+ a++ +k++r ++q+++++++
Glyma.20G037100.2.p 113 GGTSTCQDCGNQAKKDCSHRRCRTCCKSRGFDCSTHVKSTWVPASRRRERQLKGVAAAGAAVGSNgATSGAKKPRLV--ASQTTSHTSTS 200
57899*********************************************877666655555444367777777765..45555555555 PP
DUF702 92 ssaeskkeletss..........lPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
++++++++++t lP++v+++avf+cvrv+svdd ge+e+aYq++v+igGhvfkG+LydqG+e+
Glyma.20G037100.2.p 201 NNTTPPRSFDTGCspqdvgfkesLPSQVRAPAVFKCVRVTSVDDgGEDEYAYQAVVKIGGHVFKGFLYDQGVED 274
66777788887767889999999*********************899*************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 341 aa
Download sequence Send
to blast |
MWPGVSRSFN YNLAPHHDIF VVAPASSFYH HHNDVVLSDP NNNNGSNNSN NPATAHGVNV 60
FPLLTATPCL ESEGIMGNIS HHRNRIQLWQ EHESSPPQQQ QGHMERDTCG DGGGTSTCQD 120
CGNQAKKDCS HRRCRTCCKS RGFDCSTHVK STWVPASRRR ERQLKGVAAA GAAVGSNGAT 180
SGAKKPRLVA SQTTSHTSTS NNTTPPRSFD TGCSPQDVGF KESLPSQVRA PAVFKCVRVT 240
SVDDGGEDEY AYQAVVKIGG HVFKGFLYDQ GVEDKEGYPN LSELHLSGGG GGNVTSGSDG 300
GRNGISSSSP MVDRSHDVYA ASGGGLLLGG SSNYGNHPIN *
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269|PubMed:7647564}. |
| Uniprot | TISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269|PubMed:7647564}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G12330.2 | 8e-66 | Lateral root primordium (LRP) protein-related |
