PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

G2-like

Protein Properties

Length: 335aa MW: 37386.2 Da PI: 6.353

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.20G035300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.9	1.7e-31	21	75	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rF ea++qLGG+ekAtPk+++++m+++gLtl+h+kSHLQkYRl Glyma.20G035300.1.p 21 KPRLKWTPELHQRFTEAINQLGGAEKATPKSLMRVMGIPGLTLYHLKSHLQKYRL 75 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.4E-30	19	76	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.12E-16	20	76	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.0E-22	21	76	IPR006447	Myb domain, plants
Pfam	PF00249	8.6E-8	23	74	IPR001005	SANT/Myb domain
Pfam	PF14379	1.9E-22	119	164	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MDLQNVQNQS MMRLVLSTDA KPRLKWTPEL HQRFTEAINQ LGGAEKATPK SLMRVMGIPG 60 LTLYHLKSHL QKYRLGKSQP LETCSDNKQE GYSEIQNSDG HCSKEISIGT QNQMTESLKI 120 AEALQMQMEV QRKLYEQIEV QKHLQLRIEA QGKYLQSVLT KAHEALARHS SSTTGVELAK 180 FELSLLVSII NNACPSSPIS ELTETRGLSL NCGERKQDRG TMCSLESSLT SSESSEQQHI 240 MDEAENPQKF DGVSVELPLI SIHPAEVKAF KGDTSVDGRK RSAETDSDHC VDQPCGNKKL 300 RKSEVSQMLD LNSQYQRDID SSVKEIDLNF SSSF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-21	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-21	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-21	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-21	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-21	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-21	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-21	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-21	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.34147	0.0	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.20G035300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT098169	0.0	BT098169.1 Soybean clone JCVI-FLGm-12I23 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003556805.1	0.0	myb family transcription factor PHL8
Swissprot	F4I274	1e-75	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	I1NDP8	0.0	I1NDP8_SOYBN; Uncharacterized protein
STRING	GLYMA20G04630.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5218	32	53
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.1	2e-76	G2-like family protein

Link Out ? help Back to Top
Phytozome	Glyma.20G035300.1.p
Entrez Gene	100805252

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]