PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

M-type_MADS

Protein Properties

Length: 371aa MW: 42211.7 Da PI: 7.2962

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.20G034000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	61	1.4e-19	16	60	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+ r t++kRrngi+KKA ELS+LCd+++ +++f+++gk Glyma.20G034000.1.p 16 KRLENTNGRPATYAKRRNGIMKKAAELSILCDIDIILLMFAPNGK 60 6899***************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	22.988	8	60	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.1E-25	8	67	IPR002100	Transcription factor, MADS-box
CDD	cd00120	2.96E-22	9	61	No hit	No description
SuperFamily	SSF55455	3.79E-23	9	102	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-15	10	30	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-16	18	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-15	30	45	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-15	45	66	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MVHVSCMMGR VKLKIKRLEN TNGRPATYAK RRNGIMKKAA ELSILCDIDI ILLMFAPNGK 60 PSLCRGRCSN FEEVITKFGQ LTPQERTKRK LETLEALKKT FKKLDHDVNV QEFFGTSSQT 120 IEGRCYVSLT DIGQDLSNQA KLLQTQIFGT HKRLSHWTEF DKINSVDQLG RMENSLRESL 180 DQIRTHKENV KKQQQLVSLQ CNNQLNEMNI PFRMTAQQLQ PLSWIVNDND QNIVLPEDSN 240 MFLHKDVEGS VSSSFGSYDN YFGSSIKTDM SSSTQENGVL SDMSNIAPMR LQLNGQFPCL 300 QYNFNLLNNL KFQPSVEINP HENHVDYHVN EGFEAPRSSY DSNNHHGWAS TSGSCGITMF 360 EEQLYAQQPN *

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MVHVSCMMGR VKLKIKRLEN TNGRPATYAK RRNGIMKKAA ELSILCDIDI ILLMFAPNGK  60
PSLCRGRCSN FEEVITKFGQ LTPQERTKRK LETLEALKKT FKKLDHDVNV QEFFGTSSQT  120
IEGRCYVSLT DIGQDLSNQA KLLQTQIFGT HKRLSHWTEF DKINSVDQLG RMENSLRESL  180
DQIRTHKENV KKQQQLVSLQ CNNQLNEMNI PFRMTAQQLQ PLSWIVNDND QNIVLPEDSN  240
MFLHKDVEGS VSSSFGSYDN YFGSSIKTDM SSSTQENGVL SDMSNIAPMR LQLNGQFPCL  300
QYNFNLLNNL KFQPSVEINP HENHVDYHVN EGFEAPRSSY DSNNHHGWAS TSGSCGITMF  360
EEQLYAQQPN *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269\|PubMed:12949148}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.20G034000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT144948	4e-92	BT144948.1 Lotus japonicus clone JCVI-FLLj-14K19 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028221501.1	0.0	agamous-like MADS-box protein AGL30
Swissprot	Q1PFA4	8e-98	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	A0A0R0E723	0.0	A0A0R0E723_SOYBN; Uncharacterized protein
STRING	GLYMA20G04500.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2750	33	70
Representative plant	OGRP5946	11	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	2e-88	AGAMOUS-like 30

Link Out ? help Back to Top
Phytozome	Glyma.20G034000.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]