PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G008700.3.p
Common NameGLYMA_20G008700, LOC100789352
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 354aa    MW: 39988.8 Da    PI: 8.2682
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G008700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.84.9e-19219310499
                          E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                   B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                          vl ps+  + ++++lp  fae++ +g++     ++l+ ++gr+W+v++ yr+++    l++GW eF  +n+L egD++vF+l +++e  l
  Glyma.20G008700.3.p 219 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---FIKLQLSNGRQWSVRCLYRGGR--AKLSQGWFEFTVENNLGEGDVCVFELLRTKEVVL 303
                          78899******************876743...59999999********665555..66************************99999999 PP

                          EEEEE-S CS
                   B3  93 vvkvfrk 99 
                           v+vfr 
  Glyma.20G008700.3.p 304 QVTVFRV 310
                          **99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-24208309IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.01E-24209310IPR015300DNA-binding pseudobarrel domain
CDDcd100173.05E-23214309No hitNo description
SMARTSM010193.7E-19216311IPR003340B3 DNA binding domain
PROSITE profilePS5086314.099216311IPR003340B3 DNA binding domain
PfamPF023626.0E-17219309IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MYEGNSSFIV HIFNLSTSEV NYQSAIRNRN EGSCLANYHH IFDEMEDVDS LDLSDLSPQY  60
LTPGSLQNKG CVGSVDQLTP GKSHTPALQN LFNGGSKLNR INWGDGGSAF SSKNANSQGN  120
QSTRDIGVQF NANEFKRSTE ELKLRYSNEE TVNKTAKKKR KSEPYGEEPS GENEEEAEMR  180
YRFYESASAR KRTVTAEERE RAINASKTFE PTNPFCRVVL RPSYLYRGCI MYLPSCFAEK  240
NLNGVSGFIK LQLSNGRQWS VRCLYRGGRA KLSQGWFEFT VENNLGEGDV CVFELLRTKE  300
VVLQVTVFRV TEDAGLLNQP PMMQQQHIPN MSHTKLLNPH LQHRVSTTKL IRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A5e-7418231215144B3 domain-containing transcription factor VRN1
4i1k_B5e-7418231215144B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G008700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0946860.0BT094686.1 Soybean clone JCVI-FLGm-24P12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006605465.10.0B3 domain-containing transcription factor VRN1 isoform X3
RefseqXP_028222199.10.0B3 domain-containing transcription factor VRN1-like isoform X3
TrEMBLA0A0R0EGV40.0A0A0R0EGV4_SOYBN; Uncharacterized protein
TrEMBLA0A445EZ800.0A0A445EZ80_GLYSO; B3 domain-containing transcription factor VRN1 isoform C
STRINGGLYMA20G01130.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-80B3 family protein