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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.20G008700.2.p |
Common Name | GLYMA_20G008700, LOC100789352 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
B3 |
Protein Properties |
Length: 417aa MW: 47236.2 Da PI: 8.6114 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.20G008700.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 51 | 2.6e-16 | 1 | 77 | 16 | 98 |
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
+++p +f++++g + s+ tl+ ++g +W++ l +k ++r+++ +GW++Fv+ + +g f+vF+++g+s+f v++f+
Glyma.20G008700.2.p 1 MRIPDNFLRKYGTQ--LSTIATLTVPDGSVWRIGL--KKADNRILFVDGWQDFVQHYSIGVGYFLVFMYEGNSSF--IVHIFN 77
68*********966..9999***************..*************************************9..999986 PP
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2 | B3 | 59.3 | 6.6e-19 | 282 | 373 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
vl ps+ + ++++lp fae++ +g++ ++l+ ++gr+W+v++ yr+++ l++GW eF +n+L egD++vF+l +++e l
Glyma.20G008700.2.p 282 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---FIKLQLSNGRQWSVRCLYRGGR--AKLSQGWFEFTVENNLGEGDVCVFELLRTKEVVL 366
78899******************876743...59999999********665555..66************************99999999 PP
EEEEE-S CS
B3 93 vvkvfrk 99
v+vfr
Glyma.20G008700.2.p 367 QVTVFRV 373
**99985 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 417 aa
Download sequence Send
to blast |
MRIPDNFLRK YGTQLSTIAT LTVPDGSVWR IGLKKADNRI LFVDGWQDFV QHYSIGVGYF 60 LVFMYEGNSS FIVHIFNLST SEVNYQSAIR NRNEGSCLAN YHHIFDEMED VDSLDLSDLS 120 PQYLTPGSLQ NKGCVGSVDQ LTPGKSHTPA LQNLFNGGSK LNRINWGDGG SAFSSKNANS 180 QGNQSTRDIG VQFNANEFKR STEELKLRYS NEETVNKTAK KKRKSEPYGE EPSGENEEEA 240 EMRYRFYESA SARKRTVTAE ERERAINASK TFEPTNPFCR VVLRPSYLYR GCIMYLPSCF 300 AEKNLNGVSG FIKLQLSNGR QWSVRCLYRG GRAKLSQGWF EFTVENNLGE GDVCVFELLR 360 TKEVVLQVTV FRVTEDAGLL NQPPMMQQQH IPNMSHTKLL NPHLQHRVST TKLIRN*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4i1k_A | 6e-73 | 245 | 375 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 6e-73 | 245 | 375 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots and at lower levels in aerial parts. {ECO:0000269|PubMed:12114624}. |
Functional Description ? help
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Source |
Description |
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |