PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G264200.2.p
Common NameGLYMA_19G264200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 331aa    MW: 37260.1 Da    PI: 5.6943
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G264200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.1e-182774148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT +Ed+ l+++++ +G g+W++ ar  g++Rt+k+c++rw++yl
  Glyma.19G264200.2.p 27 RGPWTVDEDLALINYIANHGEGRWNSLARSAGLKRTGKSCRLRWLNYL 74
                         89********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.5892278IPR017930Myb domain
SuperFamilySSF466891.05E-2224110IPR009057Homeodomain-like
SMARTSM007171.4E-142676IPR001005SANT/Myb domain
PfamPF002493.5E-162774IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-222881IPR009057Homeodomain-like
CDDcd001672.05E-112974No hitNo description
PROSITE profilePS500904.63575142IPR017877Myb-like domain
SMARTSM007171.579116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-782117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEVKGRISNS TITTTTIQSE DEMDLRRGPW TVDEDLALIN YIANHGEGRW NSLARSAGLK  60
RTGKSCRLRW LNYLRPDVRR GNITLEEQLL ILELHGRWGN RTDNEIKNYW RTRVQKQAKQ  120
LKCDVNSKQF KDAMRYLWMP RLVERIQAAA AAATTATATV GSPTASASAT TTITTNNNAT  180
TYNYENNNNN NLNNSFEVHS GNMMLRNPAI MNINNFVGSH SYTPENNSTG ASSDSFGAQV  240
SPVSDLTQDY YNNVTVENNN NNNNPNPEYY QQAHDQLSFL DCITSPSGLF DFQSMEPNTP  300
WIQSNVGDTS TNGFWNVENM LLFQQLSDNM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-16241171104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G264200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003546301.10.0transcription factor MYB108
RefseqXP_028203043.10.0transcription factor MYB108-like
TrEMBLI1MGB40.0I1MGB4_SOYBN; Uncharacterized protein
STRINGGLYMA15G14620.11e-180(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.12e-71myb domain protein 78