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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.19G261300.1.p |
| Common Name | GLYMA_19G261300, LOC100812161 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
B3 |
| Protein Properties |
Length: 414aa MW: 45902.9 Da PI: 8.1033 |
| Description |
B3 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.19G261300.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 100.1 | 1.3e-31 | 90 | 194 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-. CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld. 85
f+kv tpsdv+k++rlv+pk++ae++ ++++e++ l +ed++g++W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++
Glyma.19G261300.1.p 90 FEKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDRNGKVWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGl 179
99****************************66677899*************************************************766 PP
SS.SEE..EEEEE-S CS
B3 86 gr.sefelvvkvfrk 99
g+ + +l++ ++++
Glyma.19G261300.1.p 180 GDlYRHRLYIDWRKR 194
887888888888776 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 414 aa
Download sequence Send
to blast |
MELMQQVKGN YSDSREEEEA AAEIITITRE PESSRLHQQD AASNFGKKLD LMDLSLGSSK 60
EEEEGKLQQG GGGGGVVHHA HEIVEKENMF EKVVTPSDVG KLNRLVIPKQ HAEKYFPLDS 120
SSNEKGLLLN FEDRNGKVWR FRYSYWNSSQ SYVMTKGWSR FVKEKKLDAG DIVSFQRGLG 180
DLYRHRLYID WRKRSAHPHA HHHAPDPLFL PSIRWYSLPP TMPPRYHHDH HFHHHLNYNN 240
LFTFQQHQYQ LGAATAAATA AHHGDQNSGS GSLYYLRSSM SMGGGDQNLQ GRGNNIVPMI 300
IDSVPVSVGH HNNRHGNGGI TSGGATSSGK RLRLFGVNME CASSAEDSKG LSSGSAAHVT 360
TAASSSLHQR LRLPLPHEDP LSSSSARFGD HKGGSTGTSL LFDLDPSLQY HRQ*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5os9_A | 2e-61 | 83 | 194 | 1 | 113 | B3 domain-containing transcription factor NGA1 |
| 5os9_B | 2e-61 | 83 | 194 | 1 | 113 | B3 domain-containing transcription factor NGA1 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015035 | 1e-152 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Lee BH, et al.
The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
Plant Mol. Biol., 2015. 89(4-5): p. 529-38
[PMID:26433582] - Lozano-Sotomayor P, et al.
Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
Plant J., 2016. 88(3): p. 437-451
[PMID:27402171] - Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
Active suppression of a leaf meristem orchestrates determinate leaf growth.
Elife, 2017.
[PMID:27710768] - Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
FEBS J., 2018. 285(21): p. 4041-4059
[PMID:30183137] - Sato H, et al.
Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
[PMID:30397148]
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