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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.19G260900.1.p | ||||||||
Common Name | GLYMA_19G260900, LOC780540 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 820aa MW: 89791.1 Da PI: 6.5779 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.5 | 4.9e-16 | 94 | 138 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ Glyma.19G260900.1.p 94 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 138 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 28 | No hit | No description |
SuperFamily | SSF46689 | 8.97E-17 | 88 | 144 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.173 | 89 | 143 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-8 | 91 | 141 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.7E-17 | 92 | 141 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.1E-12 | 93 | 141 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-13 | 94 | 137 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.63E-9 | 96 | 139 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0042754 | Biological Process | negative regulation of circadian rhythm | ||||
GO:0043433 | Biological Process | negative regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 820 aa Download sequence Send to blast |
MHDRTFNSLL LHHGFTSSSI TLSSASACFH HNGLTIWCVP CHKKRKEIFL LPTPRQGRSE 60 AALASSTRPL MDADSSGEEV LIKTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE 120 EHIGTKTAVQ IRSHAQKFFT KLEKEAFVKG VPIGQALDID IPPPRPKRKP NNPYPRKTNV 180 GGAPTLHSGA RHGKPLISIV SSLGKQALGL EKEPLPEKHD VDLRPSTVKE NKDQSCSKVF 240 TILQEAPCSS VSSANKNSTS ILVPLRNSCA LRKFIPSVKD VITQDETNDS FVTDDLENQK 300 LEIDDGKHTQ KSNGTCKVSK SENSGASELV QTEKTDGLNC ALTIEGVQGN QNYPRHVPVH 360 VVDGNLGTST QNPSPDMVFQ DSIFQPKGGV NGQPNLVTIS ATSNISESQN NTARSSIHQS 420 FPPCPTFTQD DYHSFLQVSS TFSSLIVSTL LQNPAAHAAA SFAATFWPYA NAETSADSPM 480 CTPDFPSRQI GSPPSVTAIA AATVAAATAW WAAHGLLPLC APLHTAFACP PASAIAVPLM 540 NIDESPQKTE QEEIKPQNSS LQDQILDPEH SEAQHSAPKS PAVFSSKSEE RGDANLNTSP 600 KATNHETNQV ISENPDSNKM KGRKPVDRSS CGSNTTSSSE ETELLLKDEK EKEEPKTPDA 660 NILDTELSNR RSRSINNLTD SWKEVSEEGR LAFQALFSRE VLPQSFSPTH DLINEDNQID 720 SIKDNDQNTD YKDEDLESKK CSSNCDGVQK NLLFVKDNNE EEGLLIIGLG PGKLKTRPTG 780 FKPYKRCSVE ANENRIGTAC NQGEEKGPKR IRLNGEAST* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.30195 | 0.0 | flower| hypocotyl| leaf| meristem| pod| root| stem |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00119 | DAP | Transfer from AT1G01060 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.19G260900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU076434 | 0.0 | EU076434.1 Glycine max late elongated hypocotyl and circadian clock associated-1-like protein 2 (LCL2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006604918.1 | 0.0 | protein LHY isoform X1 | ||||
TrEMBL | A0A0R0ETE0 | 0.0 | A0A0R0ETE0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G45030.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4860 | 25 | 37 |
Representative plant | OGRP9903 | 5 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46830.1 | 7e-79 | circadian clock associated 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.19G260900.1.p |
Entrez Gene | 780540 |