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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.19G257400.1.p | ||||||||
Common Name | GLYMA_19G257400, MYB185 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 282aa MW: 31874.9 Da PI: 7.8577 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.3 | 2.8e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed ll ++++ +G g+W++ +++ g+ R++k+c++rw +yl Glyma.19G257400.1.p 14 RGPWTPREDALLTKYIQTHGEGQWRSLPKRAGLLRCGKSCRLRWMNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 54.7 | 2.4e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+eEd+l+v+ + +lG++ W++Ia +++ gRt++++k++w+++l Glyma.19G257400.1.p 67 RGNITPEEDDLIVRMHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112 7999******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.699 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.56E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-24 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.06E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.193 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-27 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.30E-12 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MGRAPCCSKV GLHRGPWTPR EDALLTKYIQ THGEGQWRSL PKRAGLLRCG KSCRLRWMNY 60 LRPDIKRGNI TPEEDDLIVR MHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLSKKLRNQG 120 TDPKTHDKLT EAPEKKKGKK KNKQKNENNK GSEKTLVYLP KPIRVKALSS CIPRTDSTLT 180 LNSNSATAST SEEKVQSPEA EVKEVNMVWG VGDDADNGGI EIFFGEDHDL VNNTASYEEC 240 YSDVHTDDHG TLEKLYEEYL QLLNVEEKPD ELDSFAQSLL V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-26 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.28617 | 0.0 | seed coat |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.19G257400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001235820.1 | 0.0 | MYB transcription factor MYB185 | ||||
Refseq | XP_028217404.1 | 0.0 | transcription factor MYB8-like | ||||
TrEMBL | A0A0B2RUA6 | 0.0 | A0A0B2RUA6_GLYSO; Transcription repressor MYB5 | ||||
TrEMBL | Q0PJK2 | 0.0 | Q0PJK2_SOYBN; MYB transcription factor MYB185 | ||||
STRING | GLYMA19G44660.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 3e-68 | myb domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.19G257400.1.p |
Entrez Gene | 778044 |