PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G257300.1.p
Common NameGLYMA_19G257300, LOC100803085
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 180aa    MW: 20269.2 Da    PI: 6.2335
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G257300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.33e-3915113199
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaC++lrr+C ++Cvlapyfp ++  kfa vh++FGasnv+k+++ ++e++reda++++vyeA ar+rdPvyG++g i +lq+ +e+l
  Glyma.19G257300.1.p  15 PCAACRMLRRRCDSKCVLAPYFPTNEVDKFAGVHRVFGASNVIKMIQMVEETKREDAVKAMVYEATARLRDPVYGSAGAIYQLQKMIEEL 104
                          7***************************************************************************************** PP

               DUF260  91 kaelallke 99 
                          ka+l+++k+
  Glyma.19G257300.1.p 105 KAQLESIKT 113
                          ****98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.33114115IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-3915112IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MGFHCEEKDS IHLQPCAACR MLRRRCDSKC VLAPYFPTNE VDKFAGVHRV FGASNVIKMI  60
QMVEETKRED AVKAMVYEAT ARLRDPVYGS AGAIYQLQKM IEELKAQLES IKTRVSEQKD  120
QLLSIRNNNV NACGHLDQYP FPVNVDPIFD HDHLMVSDPF DFPVEGGGWV FSNMSTPSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-331511511111LOB family transfactor Ramosa2.1
5ly0_B2e-331511511111LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G257300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150382e-52AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553793.11e-134LOB domain-containing protein 1
RefseqXP_028217867.11e-134LOB domain-containing protein 1-like
SwissprotQ9SK085e-41LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A0B2RQM41e-133A0A0B2RQM4_GLYSO; LOB domain-containing protein 11
TrEMBLK7N0C61e-133K7N0C6_SOYBN; Uncharacterized protein
STRINGGLYMA19G44645.11e-134(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF140681921
Representative plantOGRP1325945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.12e-43LOB domain-containing protein 11