PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G256700.1.p
Common NameGLYMA_19G256700, LOC100801502
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 620aa    MW: 68275 Da    PI: 6.4086
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G256700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.4e-13437483455
                          HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +h e+Er+RR+++N++f  Lr+++P+ +      K++Ka+ L  A+ YI++Lq
  Glyma.19G256700.1.p 437 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAIAYINELQ 483
                          799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-5349235IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474597.59E-19431496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.30E-15432487No hitNo description
PROSITE profilePS5088817.453433482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-11437483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-18437496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-17439488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MKLDAGVVWD DEDKAMLGAV LGGRALEFLM ANWLSNESVL MAVGSEEGLQ NKLSDLVERP  60
NVSNFSWNYS IFWQLSHSKS GDWVLGWGDG CCREPSEEEE GSLGRGTLRL LRVDEEMQQR  120
MRKRVLQKLH TTFGGEDEDN YAFGLDHVTD TEMFFLASMY FSFPRGHGGP GKCFASGKHL  180
WLKSVSDYCV RSSLASSAGI QTIVLVPTDM GVVELGSVRM LPESFELLQA VKSVFSTQSP  240
SYQGVSVSTG GNAVFPGLAI GDANKVDGGV SIPKVFVNTI GNRTHFREKL AVRKMEDNRP  300
WPGHGHPDPN GNNLHNNVSF PNVRGNSLHV SSWAVNSDLR QPGPLEIFAP RAPTSSVLAE  360
LANVGKQDFR PQRQVQMQID FTGATSRPSS ARPVVGELEL SDVEASCREE QQPSFADERK  420
PRKRGRKPAN GREAPLNHVE AERQRREKLN QRFYALRSVV PNISKMDKAS LLGDAIAYIN  480
ELQAKVRIME AEKERFGSTS NDGSVLEAKL RLENQEKKAP DVDIQAFQDE VIVKVSCPLD  540
SHPVSKVIQT FNEAQISVVE SKLAAANDTI FHTFVIKSQG PEQLTKDKLI AVFSPTESNS  600
LQPLSQLDSK GIAVSIVHT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-29431493264Transcription factor MYC2
5gnj_B4e-29431493264Transcription factor MYC2
5gnj_E4e-29431493264Transcription factor MYC2
5gnj_F4e-29431493264Transcription factor MYC2
5gnj_G4e-29431493264Transcription factor MYC2
5gnj_I4e-29431493264Transcription factor MYC2
5gnj_M4e-29431493264Transcription factor MYC2
5gnj_N4e-29431493264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1418426RKPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.626080.0root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G256700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553791.10.0transcription factor bHLH13
RefseqXP_028218854.10.0transcription factor bHLH13-like
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A0B2RT160.0A0A0B2RT16_GLYSO; Transcription factor bHLH13
TrEMBLK7N0C20.0K7N0C2_SOYBN; Uncharacterized protein
STRINGGLYMA19G44570.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Representative plantOGRP25311123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-179bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]