PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G253100.1.p
Common NameGLYMA_19G253100, LOC102669451
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 294aa    MW: 33126 Da    PI: 5.136
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G253100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.8e-19101150255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          + +G+r+++ +grW+AeIrdp++   r+r++lg+++taeeAa  +++a+  ++g
  Glyma.19G253100.1.p 101 KLRGIRQRP-WGRWAAEIRDPVK---RRRVWLGTYDTAEEAAMVYDKAAITFRG 150
                          78*******.**********755...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.32E-33100157No hitNo description
PROSITE profilePS5103222.813101158IPR001471AP2/ERF domain
SMARTSM003801.7E-34101164IPR001471AP2/ERF domain
PfamPF008474.2E-12101150IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-21101157IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-28102158IPR001471AP2/ERF domain
PRINTSPR003672.4E-9102113IPR001471AP2/ERF domain
PRINTSPR003672.4E-9124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MEARFSEQKV VVTYKHVKPG ILNAAAPKVV RISVMDPYAT DEEDEDEGLV NHPRMKKFVN  60
EIRIVEKKSS TNSESAGVNR TNVSLRQHCK GKTGGSLEEK KLRGIRQRPW GRWAAEIRDP  120
VKRRRVWLGT YDTAEEAAMV YDKAAITFRG SNARTNFIKP PSRDVVLTNE TEARVTVSGE  180
NDSSEGSSHF PSPTSVLKLQ PVEIMLEEFS ETDLLSKEES SSQDSFLFLD SHSPSIDCYF  240
NFETLPPVFL GETSVTQQPV FHGNFSDISH LVNEDFQSWN WDIDSYFSDP LSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-20100157159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121125KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G253100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006605269.10.0ethylene-responsive transcription factor CRF4
RefseqXP_028216812.10.0ethylene-responsive transcription factor CRF4-like
TrEMBLA0A445FLG80.0A0A445FLG8_GLYSO; Ethylene-responsive transcription factor CRF4
TrEMBLI1NCI10.0I1NCI1_SOYBN; Uncharacterized protein
STRINGGLYMA19G44240.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-42cytokinin response factor 4