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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.19G249500.1.p |
| Common Name | GLYMA_19G249500, LOC100817863 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
Whirly |
| Protein Properties |
Length: 236aa MW: 26123.8 Da PI: 9.5601 |
| Description |
Whirly family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.19G249500.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Whirly | 188.4 | 1.1e-58 | 62 | 195 | 2 | 137 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvr 91
vyk+kaa+++ + +ptf++l+sg+++++r+G+++++++ +++erkydWek+q+falsatev++l+ +++++sc+ffhdp++ +sn+G+vr
Glyma.19G249500.1.p 62 VYKGKAAFSLIPCLPTFTKLNSGTVVVDRRGSIMMTFMHSIGERKYDWEKRQRFALSATEVGSLITMGAQDSCDFFHDPSMLSSNAGQVR 151
9***************************************************************************************** PP
Whirly 92 kalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
k+l+++P+++ G+fv+l+v n+l+++n++fsvPv+ aefav++++
Glyma.19G249500.1.p 152 KSLSIKPHAN--GYFVSLTVVNNLLNTNDYFSVPVTTAEFAVMKTA 195
********97..69******************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 236 aa
Download sequence Send
to blast |
MFKLSRMLPL TSTSRHRLLE VLSSRKVEVG DRLSHSAGIS TATNNYAAKG YASDRIFAPY 60
TVYKGKAAFS LIPCLPTFTK LNSGTVVVDR RGSIMMTFMH SIGERKYDWE KRQRFALSAT 120
EVGSLITMGA QDSCDFFHDP SMLSSNAGQV RKSLSIKPHA NGYFVSLTVV NNLLNTNDYF 180
SVPVTTAEFA VMKTACSFAL PHIMGWDQIT NQQSRGIDDL QVKGDSKVSD LEWEK*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4kop_A | 7e-86 | 53 | 212 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_B | 7e-86 | 53 | 212 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_C | 7e-86 | 53 | 212 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_D | 7e-86 | 53 | 212 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| Search in ModeBase |
| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Gma.13676 | 0.0 | cotyledon| hypocotyl| leaf| root| somatic embryo| stem |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
