PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G244800.1.p
Common NameGLYMA_19G244800, LOC100798673
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 370aa    MW: 40068.4 Da    PI: 8.2793
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G244800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.21.1e-15177231458
                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                           kr rr+ +NRe+ArrsR+RK+a + eLe+ v +L +eN++L k+    ++++ +
  Glyma.19G244800.1.p 177 AKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRSENSSLLKRFTDVSQKYNN 231
                          79*****************************************999888887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.0E-19174238IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.9E-12176230No hitNo description
PROSITE profilePS5021711.588176230IPR004827Basic-leucine zipper domain
PfamPF001703.7E-13177229IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.87E-12178229No hitNo description
PROSITE patternPS000360181196IPR004827Basic-leucine zipper domain
PfamPF124989.4E-41245358IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MNRSESEWAF QQFLQEAAAS SSSNSDHHHL KFKNEFNINI PVTTTSIQNI NVDSQDYHAI  60
LKTKLNLACA AVAMTRGSLV KSQNPATFSD SGPQASNSSE DGLQATLKGS GPSGNDPSKL  120
QNKDVKAQIG IPSSSSMQNK PAVAMRPTIS GSSGEQSDDE EVEGEINMTE NMTPVDAKRV  180
RRMLSNRESA RRSRRRKQAH LTELETQVSQ LRSENSSLLK RFTDVSQKYN NAAVDNRVLK  240
ADVETLRTKV KMAEETVKRI TGLNPMLHAI TEMSSMAMPS FDESPSETSA DAAVSVQEDP  300
NHHRCQPTSN NGLGGISSIE TVQQNVAAVV GGNKTGRTTS LHRVASLEHL QKRIRGGADS  360
RGPPSNGEQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190197RRSRRRKQ
2192197SRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.414470.0cotyledon| flower
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G244800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0932540.0BT093254.1 Soybean clone JCVI-FLGm-24C5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003554695.10.0light-inducible protein CPRF2
RefseqXP_028218673.10.0light-inducible protein CPRF2-like
SwissprotQ990901e-104CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLA0A445FL300.0A0A445FL30_GLYSO; Light-inducible protein CPRF2
TrEMBLI1NC960.0I1NC96_SOYBN; Uncharacterized protein
STRINGGLYMA19G43420.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41763358
Representative plantOGRP18391639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.21e-65bZIP family protein
Publications ? help Back to Top
  1. Liao Y, et al.
    Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis.
    Planta, 2008. 228(2): p. 225-40
    [PMID:18365246]
  2. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]