PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 333aa MW: 37263 Da PI: 6.1842

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.19G236900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.9	3.6e-13	138	189	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++++k+L+ Glyma.19G236900.1.p 138 QRMTHIAVERNRRKQMNEYLSVLRSLMPES---YVQRGDQASIIGGAINFVKELE 189 79**************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.76E-13	136	193	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.2E-14	136	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.402	137	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-16	137	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-10	138	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.6E-10	143	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MTGSHIKVLC MCLPEGERGM ALEAVVYPQP QDPFGYGIKD PSYNYNNLLE GGGGNWGFEK 60 EEQGFVTFLE NQTENYPYGE WNCSPSPPSM LPHLNASNPQ SSETSNIHNN LDSSISTPAR 120 PKRRRTKSRK NKEEIENQRM THIAVERNRR KQMNEYLSVL RSLMPESYVQ RGDQASIIGG 180 AINFVKELEQ RLQFLGGQKE KEEKSDVPFS EFFSFPQYST SAGGGCDNST AMSEQKCEAQ 240 SGIADIEVTM VESHANLKIR SKKRPKQLLK IVSSLHGMRL TILHLNVTTT GEIVLYSLSV 300 KVEEDCKLGS VDEIAAAVYQ MLDRIQQESI LN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	138	149	RMTHIAVERNRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.36651	0.0	root\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.19G236900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	1e-143	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003554664.1	0.0	transcription factor bHLH94
Refseq	XP_028217279.1	0.0	transcription factor bHLH94-like
Swissprot	Q9C7T4	2e-82	BH096_ARATH; Transcription factor bHLH96
TrEMBL	A0A0R0F2U2	0.0	A0A0R0F2U2_SOYBN; Uncharacterized protein
STRING	GLYMA19G42520.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF718	34	135
Representative plant	OGRP253	15	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	3e-81	bHLH family protein

Link Out ? help Back to Top
Phytozome	Glyma.19G236900.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]