PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

GATA

Protein Properties

Length: 83aa MW: 9675.28 Da PI: 10.4915

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.19G229900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	64.9	9.2e-21	21	54	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ C+ttkTplWR gp g+ktLCnaCG++yrk++ Glyma.19G229900.1.p 21 CADCKTTKTPLWRGGPAGPKTLCNACGIRYRKRR 54 ********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	1.0E-13	15	69	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	1.5E-15	19	54	IPR013088	Zinc finger, NHR/GATA-type
SuperFamily	SSF57716	5.23E-13	19	70	No hit	No description
PROSITE pattern	PS00344	0	21	46	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	1.7E-18	21	54	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	12.453	21	51	IPR000679	Zinc finger, GATA-type
CDD	cd00202	1.81E-11	21	54	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0030154	Biological Process	cell differentiation
GO:0045944	Biological Process	positive regulation of transcription from RNA polymerase II promoter
GO:0005634	Cellular Component	nucleus
GO:0005667	Cellular Component	transcription factor complex
GO:0000977	Molecular Function	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085	Molecular Function	RNA polymerase II transcription factor binding
GO:0001228	Molecular Function	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682	Molecular Function	chromatin binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 83 aa Download sequence Send to blast
MMDLKEWSSS SEELNVNRKC CADCKTTKTP LWRGGPAGPK TLCNACGIRY RKRRACWRKG 60 ELKKQKQKQK QRWKMLGEEE QAA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.19G229900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003554624.1	3e-54	GATA transcription factor 17
Refseq	XP_028217533.1	3e-54	GATA transcription factor 17-like
Swissprot	Q9FJ10	3e-18	GAT16_ARATH; GATA transcription factor 16
TrEMBL	A0A445FKG0	7e-53	A0A445FKG0_GLYSO; GATA transcription factor 16
STRING	GLYMA19G41780.2	2e-53	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1569	32	98
Representative plant	OGRP68	17	287

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49300.1	1e-19	GATA transcription factor 16

Link Out ? help Back to Top
Phytozome	Glyma.19G229900.1.p

Publications ? help Back to Top
Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain. Plant Physiol., 2014. 166(1): p. 293-305 [PMID:25077795] Ranftl QL,Bastakis E,Klermund C,Schwechheimer C LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana. Plant Physiol., 2016. 170(4): p. 2295-311 [PMID:26829982]