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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.19G224700.1.p | ||||||||
Common Name | GLYMA_19G224700, LOC102659557 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 634aa MW: 68907.2 Da PI: 6.0405 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.9 | 5.7e-16 | 404 | 450 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+k Lq Glyma.19G224700.1.p 404 VHNLSERRRRDRINEKMRALQELIPNC-----NKADKASMLDEAIEYLKTLQ 450 5*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.8E-20 | 397 | 459 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-20 | 398 | 462 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.171 | 400 | 449 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.01E-17 | 403 | 454 | No hit | No description |
Pfam | PF00010 | 1.9E-13 | 404 | 450 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.4E-17 | 406 | 455 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 634 aa Download sequence Send to blast |
MPLHELYRVA KGKLDPIEMN NNTCAVDQSS VPNNDLLELV WEKGQISVQG QFSRARVSPN 60 CKTLPSHCLP SHTPIGYANN AISTNTRMGK CGNLGVELNE IRRLVPSGEV DLSEEEEDMV 120 MPWFNYGMED SLQHGYSTDF FHEPSSYGVT MNELSASNNF SLLDRRNNCT KIFRDTHKHS 180 SYAPVRSSVA DIAENNANNV PSGSSGFSSL KMERQGPVMC SSSSTMMNFS HFAKPAAIVK 240 ANIENIGLAS RSGNEGIQIK SAAATVTNPA ESTKVELSGE CPKKPATHNQ DQDVTVSTKC 300 DPSCKDVSKV DQNQTSNLVV GESVNKGHEA VEKGVELAVV SSSVCSGNGP ERGSEDPNQN 360 LKRKSKDTED FESQSEDVEE ESVGVNKEVP ARRNGAKKSR SAEVHNLSER RRRDRINEKM 420 RALQELIPNC NKADKASMLD EAIEYLKTLQ LQLQIMSMGT SLCMPAMMLH PGMQHMHAPH 480 MGPFSPIGVG MQMRLGVGCG MGMPDANDIE SSRFIQVPQM QGTHHPSQGH PIPMPHAPIF 540 SFPGEPFINP STLGLVETVD KASSAFGLIK DQIPQLAQNT NNGCNSTNQM STVQCEATIG 600 GFEHSILVLN SGHATSVNDR GAINPSTEDN PYH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 408 | 413 | ERRRRD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.19G224700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235180 | 0.0 | AC235180.1 Glycine max strain Williams 82 clone GM_WBb0008A05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006604779.1 | 0.0 | transcription factor PIF3 | ||||
TrEMBL | K7MZQ4 | 0.0 | K7MZQ4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G41261.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5271 | 33 | 53 | Representative plant | OGRP258 | 16 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 1e-57 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.19G224700.1.p |
Entrez Gene | 102659557 |