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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.19G222200.1.p | ||||||||
Common Name | GLYMA_19G222200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 496aa MW: 55238.1 Da PI: 7.2451 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.2 | 3.4e-17 | 94 | 141 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G g+W+++++ g+ R++k+c++rw +yl Glyma.19G222200.1.p 94 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 141 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.8 | 1.4e-14 | 147 | 190 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +++eE+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++ Glyma.19G222200.1.p 147 RGTFSQEEETLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 190 899*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-28 | 86 | 144 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.926 | 89 | 141 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.38E-29 | 92 | 188 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-13 | 93 | 143 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-15 | 94 | 141 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.43E-12 | 97 | 141 | No hit | No description |
PROSITE profile | PS51294 | 25.407 | 142 | 196 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-25 | 145 | 196 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-13 | 146 | 194 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-13 | 147 | 191 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.07E-9 | 149 | 189 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 496 aa Download sequence Send to blast |
MTSLMGPPSY INSTPFLSCH FIFLCSIHII SLALIFSLSQ SGSVPLLLTF HLQVPFNKPS 60 VNWKGSSPPH CFVGENPQYK MGRHSCCYKQ KLRKGLWSPE EDEKLLRHIT KYGHGCWSSV 120 PKQAGLQRCG KSCRLRWINY LRPDLKRGTF SQEEETLIIE LHAVLGNRWS QIAAQLPGRT 180 DNEIKNLWNS CLKKKLRQRG IDPVTHKPLS EVENGEEDKT RSQELSNELN LLNSESFKSD 240 EGSYEQRASS SIAPKAYEME GSCSSKINTT KNDTNLMSNC SNKDMFLDSY TTSCQPSDLM 300 GNYPLQITDT LPTNSNSCHW FSQTARPFDM NSEFTITSNV MSILPPTTTS FLPSTSFCYK 360 PSLGVPSEDI STASFALNGP NYWEASASNN SNGSNNTSDG SRELTTTSSK NSVLSSWGLT 420 EETKWSEYLQ NPMLMLAAPE SLCNQIRPAT HLVPDNTLGS IIVPDSKDQQ QQQQSQNSSI 480 FSKDTQKLTA AFGHI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-29 | 92 | 196 | 5 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 191 | 197 | LKKKLRQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.19439 | 0.0 | leaf| pod| seed coat| stem |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00427 | DAP | Transfer from AT4G01680 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.19G222200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT097326 | 0.0 | BT097326.1 Soybean clone JCVI-FLGm-21J24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001242243.2 | 0.0 | MYB transcription factor MYB64 | ||||
TrEMBL | K7MZN6 | 0.0 | K7MZN6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G41010.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1083 | 33 | 103 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01680.3 | 1e-93 | myb domain protein 55 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.19G222200.1.p |