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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.19G218500.1.p |
Common Name | GLYMA_19G218500, LOC100818926 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
MYB_related |
Protein Properties |
Length: 434aa MW: 48925.9 Da PI: 9.9291 |
Description |
MYB_related family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.19G218500.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 22.6 | 2.4e-07 | 129 | 170 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
WT+eE ++l d+++++ + + Ia +++ Rt +++k+r+++
Glyma.19G218500.1.p 129 WTKEETDQLFDLCERFDLR-FIVIADRFPSSRTVEELKDRYYS 170
*******************.*********************96 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0043967 | Biological Process | histone H4 acetylation |
GO:0043968 | Biological Process | histone H2A acetylation |
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
GO:0000812 | Cellular Component | Swr1 complex |
GO:0035267 | Cellular Component | NuA4 histone acetyltransferase complex |
GO:0003677 | Molecular Function | DNA binding |
GO:0003714 | Molecular Function | transcription corepressor activity |
Sequence ? help Back to Top |
Protein Sequence Length: 434 aa
Download sequence Send
to blast |
MDAKDILGLP KNSFPTLEKK SRPPKESQRK PDGISREVYA LTGGLAPLMP ATEASQLKKK 60 PPPLEKITWQ WLPFTSSARK DNLHLYHWVR VVNGVPPTGD YSFAKYNKSV DVIKYTDEEY 120 DKYLTDPMWT KEETDQLFDL CERFDLRFIV IADRFPSSRT VEELKDRYYS VSRAILIARA 180 PSSGDVAAHP IVKETYNFAQ EMERKRALSM VLSQTRQQER RDEEVLVEAK KIAEKRLPPK 240 VAEQSQLVAS NAGAEATERA VPGETISPSN VQIPMAVPDN ASTLASLRML RVYLRTYALE 300 QMVQAANASA GLRTIKRVEQ TLQDLGVNLK PRVPTKAVCA EHLELRKEIL TWLNLQKQVQ 360 YKEAEGSSFR DGSYGETPGT PKHLHRVGDQ DRTFVPDSTN FGVERVGKKD QKRKAPGAPS 420 AHKRPRKLKA SDL*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3hm5_A | 6e-21 | 100 | 185 | 4 | 93 | DNA methyltransferase 1-associated protein 1 |
4iej_A | 6e-21 | 100 | 185 | 4 | 93 | DNA methyltransferase 1-associated protein 1 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}. |