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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.19G214900.1.p | ||||||||
Common Name | GLYMA_19G214900, LOC100817316 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 355aa MW: 40405.2 Da PI: 5.7511 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.8 | 3.8e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWTteEde+l +++ G g+W++ ++ g+ R++k+c++rw +yl Glyma.19G214900.1.p 14 KGRWTTEEDEILTKYIMANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 48.4 | 2.2e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE+ ++++++ +G+ W++Ia++++ gRt++++k++w+++l Glyma.19G214900.1.p 67 RGNFSVEEESTILKLHASFGSS-WSLIASHLP-GRTDNEIKNYWNSHL 112 89******************99.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-21 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.911 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.82E-27 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.0E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.03E-7 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 23.769 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.26E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MVRAPCCEKV GLKKGRWTTE EDEILTKYIM ANGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRADLKRGNF SVEEESTILK LHASFGSSWS LIASHLPGRT DNEIKNYWNS HLSRKIYTFH 120 GKTTSKGIIT LPPRRKRGRT SRWAMKNKNQ KGSSSTQQQQ QQIHHHLNNE VAVPLPPKPP 180 LETEKYLSTN IILMEEQVDG SSTASTITND HKHENTTTMC VEGEKEEILN DDIWGPYVEE 240 VINGGELVLN FDDFMDHCWQ EASGVWTISD EQRESNINIV VGNEKVDDDM CTNVIMSSGD 300 HDRLHSSSSI ASDLDQNLLT WLWEDEDWEK DLQSLGEIHS DKLKAMVDWF LSSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-21 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.19G214900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094295 | 2e-57 | BT094295.1 Soybean clone JCVI-FLGm-18O14 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003553664.1 | 0.0 | transcription factor MYB111 | ||||
Refseq | XP_028217761.1 | 0.0 | transcription factor MYB111-like | ||||
TrEMBL | A0A445FJN6 | 0.0 | A0A445FJN6_GLYSO; Transcription factor MYB12 | ||||
TrEMBL | K7MZK1 | 0.0 | K7MZK1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G40250.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 3e-70 | myb domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.19G214900.1.p |
Entrez Gene | 100817316 |