PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G214600.1.p
Common NameGLYMA_19G214600, LOC100806818
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 195aa    MW: 21923.8 Da    PI: 10.7318
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G214600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.83.9e-054264123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C+++F ++  L  H++ H
  Glyma.19G214600.1.p 42 FRCHYCKRVFGNSQALGGHQNAH 64
                         89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.41E-63969No hitNo description
PfamPF139122.7E-54266IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.2814269IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MSNHHHVVQT SPPKLFGFPL TEQEELNSDA ERKYEVGEDR KFRCHYCKRV FGNSQALGGH  60
QNAHKKERQR ARRFQIHTHR RSIAAPSSAS VLNSHAIIRS VPSVTVTTLP SSIYLRGGPP  120
TTSSLLPIFH PRQPNNTKHF PSRPILIPSS TYHRTNCTPS FPFQLYASPS VLQSAPNVRD  180
FSAESREVDV HLKL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.188210.0meristem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G214600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0932089e-61BT093208.1 Soybean clone JCVI-FLGm-17A17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003554539.11e-141protein LATE FLOWERING
RefseqXP_028217624.11e-141protein LATE FLOWERING-like
TrEMBLA0A445FJV31e-140A0A445FJV3_GLYSO; Zinc finger protein GIS2
TrEMBLI1NBA61e-140I1NBA6_SOYBN; Uncharacterized protein
STRINGGLYMA19G40220.11e-141(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39032449
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.13e-16C2H2 family protein