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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.19G208900.1.p | ||||||||
Common Name | GLYMA_19G208900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 536aa MW: 58395.9 Da PI: 7.8253 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.1 | 1.5e-05 | 85 | 107 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Glyma.19G208900.1.p 85 FVCEICNKGFQRDQNLQLHRRGH 107 89*******************88 PP | |||||||
2 | zf-C2H2 | 16.1 | 3.1e-05 | 161 | 183 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H++t+ Glyma.19G208900.1.p 161 WKCDKCSKRYAVQSDWKAHQKTC 183 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.7E-8 | 84 | 107 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-5 | 84 | 107 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 8.6E-5 | 85 | 107 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.949 | 85 | 107 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 85 | 107 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 87 | 107 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 75 | 126 | 156 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 8.9E-6 | 149 | 182 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.7E-8 | 156 | 182 | No hit | No description |
SMART | SM00355 | 89 | 161 | 181 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 536 aa Download sequence Send to blast |
MSNISGDEGS FSSGNNGEEV HQESQQQHLQ SQLHDSSSGP SGACNSNASS NQQQTKKKRN 60 LPGTPDPNAE VVALSPTTLM ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLRQRTSTE 120 VKKRVYVCPE PSCVHHNPAR ALGDLTGIKK HYSRKHGEKK WKCDKCSKRY AVQSDWKAHQ 180 KTCGTREYKC DCGTIFSRRD SFITHRAFCD ALTEENNRVN NQGLTSGMPP NLQSQIPDLM 240 STMPLTTSPN TASKFGEYDP KNPLKSLAQE LVPIPFKFMS MGGGMFSTNA GALFGGPKTM 300 SPSSSSLQLG SSTSSSFNYL QDSENGGLIA ASAQMSATAL LQKAAQMGAT ASNSINSPMM 360 QKGFVSGTTT GPDHVSSTTR PPYSGAMLQH NNSYDHFSPQ PDLSSMAEVS GGGAFINQLF 420 HKGQEISQVF DTNNPGSAMN DVGMFGQMPM GRDHHNQGLM KSVEQEVSNS SSLMHGRDVN 480 DGNHPMQPST RFGGSDMTTV HDFLGIGGST SRVMNHFHHH FPHEDSTIEE PMWDV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-34 | 157 | 221 | 3 | 67 | Zinc finger protein JACKDAW |
5b3h_F | 2e-34 | 157 | 221 | 3 | 67 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.19G208900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235349 | 0.0 | AC235349.1 Glycine max strain Williams 82 clone GM_WBb0092H01, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028217517.1 | 0.0 | zinc finger protein GAI-ASSOCIATED FACTOR 1-like | ||||
Swissprot | Q9SCQ6 | 1e-114 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A445FJL2 | 0.0 | A0A445FJL2_GLYSO; Protein indeterminate-domain 2 | ||||
TrEMBL | K7MZH6 | 0.0 | K7MZH6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G39640.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2192 | 30 | 85 | Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-112 | indeterminate(ID)-domain 2 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.19G208900.1.p |
Publications ? help Back to Top | |||
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