![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.19G208700.1.p | ||||||||
Common Name | GLYMA_19G208700, LOC100806633 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 1025aa MW: 113955 Da PI: 9.6016 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 20.9 | 6.1e-07 | 69 | 125 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + +s++e e+++ lg+t +qV+ +F +R + ++ Glyma.19G208700.1.p 69 KRPRDLLNPKAVNYMQSVFSIKDAISKKELHEISALLGVTVTQVRDFFNAQRSRVRR 125 799**************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.106 | 66 | 126 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.7E-5 | 68 | 130 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.13E-7 | 68 | 132 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.39E-5 | 69 | 126 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-5 | 69 | 130 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.8E-4 | 69 | 125 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.20.930.10 | 2.4E-5 | 225 | 309 | IPR017923 | Transcription factor IIS, N-terminal |
SuperFamily | SSF47676 | 2.22E-5 | 231 | 309 | IPR017923 | Transcription factor IIS, N-terminal |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1025 aa Download sequence Send to blast |
MDAWNEDFSV LEIGSSAESF QKFLVSQKEL FHSQIDQFQE IVVTQCKLTG VNPLSQEMAA 60 GALSIKIGKR PRDLLNPKAV NYMQSVFSIK DAISKKELHE ISALLGVTVT QVRDFFNAQR 120 SRVRRSVQLS RERVLSSNSC EEPHDDQINS DPMRPINPTP LNSAGQSNTE EASCSTQEVA 180 LPDLDDSDKQ FVDNIFSLIQ KEETFSGQEK LMEWILTIQN FSVLLWFLSR GGGMNLATWL 240 SKAAAEEQTS VLLLILKVLC HLPLHKAIPM HISAILQSVN KLRFYRTSDI SNRARVLLSK 300 WSKLFARNQV IKKPNGVKIS IDGHKEMMLS QSIGQFMGSE SWHSNIDVPE DILALSSECS 360 DNFRKMGSPQ GVKLLPPSLD DSNKKSSLGV SSSQSRERRK VQLVEQPGQK SVSRSSQVTR 420 AGPVSQGRPM SVDDIQKAKM RALFMQSKYG KSGSKESKET KIDSPNKQPQ TNPASIAACS 480 SKVPTPPKIE ENKKPLLLTS KTTNRLEASY SKPKMDVKEP LWEKCKRVQI PWRTPAEVEL 540 KDTWRVGGGE NSKEVEVQRN RNRRDKEIIY KTVQEMPPNP KEPWDLEMDY DDTLTLEIPI 600 EQLPDGDGAD IAISPNQVGT HTVQGVASTS STGVATAEPD LELLAVLLKN PELVFALTSG 660 QGGSIPNQET VKLLDMIKSG GVNLGLSENT NGSYGTSVKS PEKVEVSLPS PTPLSDPRTS 720 GWSSEASKNP FSRRSLAPDR ITQNHAAVAT TNLLSQIPIT GTTVRQQPTV VVPSSRHLTS 780 TSVSPYSLPH ATNVIPEKPS PLGQVQTSSD VGLTMKNLTT ANASSVNFPG THSTLALRGD 840 GTNYVKPVPN LSVQHEGLSN SFRQPFMPPS PTPSHSSLQQ QRHQHLTQEV HYTEPPYRNP 900 GRSYPPQIEK SDHGSDNMWR VRQDHVSSSY HSQRNHNNNY NTMVGGSRQS GFWDRNNHAR 960 GEFESWSPEN SPTRNPRYAP GRNYPESRMN HGRNPRPEWS RQRGSSGHWD PGRQGNRKWH 1020 DQRR* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.37940 | 0.0 | cotyledon| flower |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates prior to flowering in the vegetative shoot apical meristem and after flowering in floral meristems. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot apex, root apex, leaf primordia and floral buds. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269|PubMed:10363371}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.19G208700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC235349 | 0.0 | AC235349.1 Glycine max strain Williams 82 clone GM_WBb0092H01, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003553647.1 | 0.0 | homeobox protein LUMINIDEPENDENS | ||||
Refseq | XP_028217888.1 | 0.0 | homeobox protein LUMINIDEPENDENS-like | ||||
Swissprot | Q38796 | 0.0 | LUMI_ARATH; Homeobox protein LUMINIDEPENDENS | ||||
TrEMBL | A0A445FJL7 | 0.0 | A0A445FJL7_GLYSO; Homeobox protein LUMINIDEPENDENS | ||||
TrEMBL | I1NB35 | 0.0 | I1NB35_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G39620.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9809 | 29 | 34 |
Representative plant | OGRP4121 | 13 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G02560.2 | 1e-144 | HB-other family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.19G208700.1.p |
Entrez Gene | 100806633 |
Publications ? help Back to Top | |||
---|---|---|---|
|