PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G207100.2.p
Common NameCOL9, GLYMA_19G207100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CO-like
Protein Properties Length: 352aa    MW: 38947.6 Da    PI: 6.2714
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G207100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.42.5e-07549240
             zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                         e+r C+ +++  + l+C+ ++  lC +C  e H+       Ht++
  Glyma.19G207100.2.p  5 EARPCDYCGNSTALLYCRADSAKLCFSCDREVHSTnqlfskHTRT 49
                         5789******99*********************668888888876 PP
2zf-B_box27.65.9e-095194542
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42
                          C+ +++ ++++ C ++ + lC++C  e H +       H+++pl
  Glyma.19G207100.2.p 51 LCDACDDSPATILCSTDTSVLCQNCDWENH-NpalsdslHERRPL 94
                         7*****************************.54888899988775 PP
3CCT64.72.7e-22305346142
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvk 42 
                          R+ allRYk+K+ktR+F+K+irYesRK++AesR RvKGrF+k
  Glyma.19G207100.2.p 305 RDSALLRYKQKKKTRRFDKHIRYESRKVRAESRVRVKGRFAK 346
                          899**************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.3E-14451IPR000315B-box-type zinc finger
PROSITE profilePS5011910.395451IPR000315B-box-type zinc finger
PfamPF006432.7E-6549IPR000315B-box-type zinc finger
CDDcd000211.33E-7751No hitNo description
PROSITE profilePS5011910.1534794IPR000315B-box-type zinc finger
PfamPF006433.0E-75194IPR000315B-box-type zinc finger
CDDcd000216.27E-55194No hitNo description
SMARTSM003360.385294IPR000315B-box-type zinc finger
PROSITE profilePS5101714.763305347IPR010402CCT domain
PfamPF062031.6E-16305346IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MSGAEARPCD YCGNSTALLY CRADSAKLCF SCDREVHSTN QLFSKHTRTL LCDACDDSPA  60
TILCSTDTSV LCQNCDWENH NPALSDSLHE RRPLEGFTGC PSVSELLSIV GFSDISKKSL  120
LFSPQGSVAD GFFGASEIEG LSDMFVWDAP SFVTLDDLIS SSPSSHSFQA MKVPPLPKNR  180
KAACGQHKEE ILSQLRELAK SEPLDLEPYV QSGNLSLGFE RDPEADIFPS HEWHRESSEP  240
MHQVVPPDPS MGTYTEEIPV KHSTSAVGEN HTYGDNEGKP SISLKSETLS TTPKAAACEL  300
TSQERDSALL RYKQKKKTRR FDKHIRYESR KVRAESRVRV KGRFAKMGHE H*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1313319QKKKTRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.161720.0cotyledon| leaf| meristem| seed coat| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G207100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ8642630.0GQ864263.1 Glycine max CONSTANS-like zinc finger protein (COL9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241399.10.0zinc finger protein CONSTANS-LIKE 13-like
RefseqXP_028218965.10.0zinc finger protein CONSTANS-LIKE 13-like
TrEMBLA0A445FJA40.0A0A445FJA4_GLYSO; Zinc finger protein CONSTANS-LIKE 13 isoform A
TrEMBLD0EP040.0D0EP04_SOYBN; CONSTANS-like zinc finger protein
STRINGGLYMA19G39460.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.13e-88B-box type zinc finger protein with CCT domain