PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NF-YA

Protein Properties

Length: 347aa MW: 37914 Da PI: 9.3182

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.19G200800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	96.6	2.8e-30	177	233	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++I++RRq+Rak+ ++kl +k kpy+heSRh hA+rRpRgsgGrF Glyma.19G200800.1.p 177 DGPIYVNAKQYHGIIRRRQSRAKAVLDHKL-TKRCKPYMHESRHLHAMRRPRGSGGRF 233 57**************************.999*********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	5.8E-35	175	236	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	34.609	176	236	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.3E-22	179	201	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	5.4E-27	179	233	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.3E-22	210	233	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MLLLLLQFLQ LSFILPMAMQ TVYLKKHEGN AHNFVGTLSS AASAPWWSAF GSQSVHQGES 60 CGQMKPFALE LPNCIDQLAA TKLSARGAEQ VLGEGHTTQF TIFPDGCKMS DDAQKLQTTI 120 SLQSSLTDPH SRFEIGFSQP MLCAKYPYTD QFYGLFSAYA PQISGRIMLP LNMSSDDGPI 180 YVNAKQYHGI IRRRQSRAKA VLDHKLTKRC KPYMHESRHL HAMRRPRGSG GRFLNTRSSI 240 NGNGKLGNEV HKTVGEQLQS SDSQSSEFLQ SEVGTLNSSK ETNGSSPNIS GSEVTSMYSR 300 GGLDSFSLNH LGSAVHSFAN MIDGGRGMII PPKWVAAAGN CYNLKV*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MLLLLLQFLQ LSFILPMAMQ TVYLKKHEGN AHNFVGTLSS AASAPWWSAF GSQSVHQGES  60
CGQMKPFALE LPNCIDQLAA TKLSARGAEQ VLGEGHTTQF TIFPDGCKMS DDAQKLQTTI  120
SLQSSLTDPH SRFEIGFSQP MLCAKYPYTD QFYGLFSAYA PQISGRIMLP LNMSSDDGPI  180
YVNAKQYHGI IRRRQSRAKA VLDHKLTKRC KPYMHESRHL HAMRRPRGSG GRFLNTRSSI  240
NGNGKLGNEV HKTVGEQLQS SDSQSSEFLQ SEVGTLNSSK ETNGSSPNIS GSEVTSMYSR  300
GGLDSFSLNH LGSAVHSFAN MIDGGRGMII PPKWVAAAGN CYNLKV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-16	179	237	4	62	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.3584	0.0	hypocotyl\| root

Function -- GeneRIF ? help Back to Top
GmNF-YA1a/b are positive regulators in arbuscular mycorrhiza establishment, whose expression is down-regulated by NARK in the autoregulated root tissue thereby diminishing subsequent infections. [NF-Y1b] [PMID: 23777981]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.19G200800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT092539	0.0	BT092539.1 Soybean clone JCVI-FLGm-16A23 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014626883.1	0.0	nuclear transcription factor Y subunit A-10 isoform X1
Refseq	XP_028215961.1	0.0	nuclear transcription factor Y subunit A-10-like isoform X2
TrEMBL	A0A445FJ05	0.0	A0A445FJ05_GLYSO; Nuclear transcription factor Y subunit A-10 isoform A
TrEMBL	K7MZC0	0.0	K7MZC0_SOYBN; Uncharacterized protein
STRING	GLYMA19G38800.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3794	34	64
Representative plant	OGRP5136	11	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.2	1e-54	nuclear factor Y, subunit A10

Link Out ? help Back to Top
Phytozome	Glyma.19G200800.1.p
Entrez Gene	100815382

Publications ? help Back to Top
Schaarschmidt S,Gresshoff PM,Hause B Analyzing the soybean transcriptome during autoregulation of mycorrhization identifies the transcription factors GmNF-YA1a/b as positive regulators of arbuscular mycorrhization. Genome Biol., 2013. 14(6): p. R62 [PMID:23777981]