PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G199500.1.p
Common NameGLYMA_19G199500, LOC100810901
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 681aa    MW: 74133.2 Da    PI: 7.1854
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G199500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.5e-093834201954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Glyma.19G199500.1.p 383 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 420
                          554459******************************88 PP
2BELL118.23.7e-38247318172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          erqe+q+kkakL+ +l+eV++rY+qy++q+++v+ssFe++ag+gsa+ Yt+lAl++iS++FrcLkdaia+q+
  Glyma.19G199500.1.p 247 ERQEIQMKKAKLIGMLDEVEQRYRQYQQQMEIVVSSFEQAAGIGSARTYTALALQTISKQFRCLKDAIAGQV 318
                          79*******************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005748.5E-60174316IPR006563POX domain
PfamPF075265.8E-46181315IPR006563POX domain
PROSITE profilePS5007112.195361424IPR001356Homeobox domain
CDDcd000861.56E-12364424No hitNo description
SMARTSM003895.3E-9364428IPR001356Homeobox domain
SuperFamilySSF466895.56E-17365432IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-29367431IPR009057Homeodomain-like
PfamPF059202.8E-18381420IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MATYFHHGNS EIQSGGADGL QTLVLMNPGY IHYSDAPQQQ QQQSSLAAGN LVFLNPAAVA  60
GGNNNSFNPH APPSHTQQFV GVPLPNSQDL NHHSMHAHHD VSALHGFLPR MQYNPWNAFD  120
PTSAARETPR AQQGLSLGLG SFREGQAPAM SGDDLRVSGG SPSSASGVTN NGASGIHSVP  180
LSSKYLKAAH ELLEEVANVN NGIGTELRKK SGGQTRVIGE SSAAGSGDGS VGGEGNGKRS  240
SELSTAERQE IQMKKAKLIG MLDEVEQRYR QYQQQMEIVV SSFEQAAGIG SARTYTALAL  300
QTISKQFRCL KDAIAGQVRT ANKSLGEEDC FGGKMEGSRL KYVDHHLRQQ RALQQLGMIQ  360
HNAWRPQRGL PERSVSVLRA WLFEHFLHPY PKDSDKHMLA KQTGLTRSQV SNWFINARVR  420
LWKPMVEEMY MEEMKDHEQN GSEDKSSKSN EDSSSKMSAP QDKGPSNETE AKSFNSKQEV  480
SKSQNTAMVS VSRPSTSPLG VNVRNQSGFS FMGSSELDGI TQGSPKKPRN HEMMHSPNSV  540
PSLNMDVKPN DENSEQLSMR FGVERQGRNE SSFMGNQTNF IGGFGQYPIG DIGRFDAEQF  600
TPRFSGNGVS LTLGLDSLPG THQTFLPNQN IQLGRSLDIG EPNEFGAIST SSPHSTAAYE  660
SISMQNPKRF AAQLLPDFVT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-16370428563Homeobox protein Meis2
3k2a_B4e-16370428563Homeobox protein Meis2
4xrs_A4e-16370427158Homeobox protein Meis1
4xrs_B4e-16370427158Homeobox protein Meis1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.419690.0cotyledon| leaf| seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G199500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003554466.10.0BEL1-like homeodomain protein 1
RefseqXP_006604654.10.0BEL1-like homeodomain protein 1
RefseqXP_028217308.10.0BEL1-like homeodomain protein 1
RefseqXP_028217309.10.0BEL1-like homeodomain protein 1
RefseqXP_028217310.10.0BEL1-like homeodomain protein 1
RefseqXP_028217311.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-173BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A445FIY60.0A0A445FIY6_GLYSO; BEL1-like homeodomain protein 1 isoform A
TrEMBLI1NAU40.0I1NAU4_SOYBN; Uncharacterized protein
STRINGGLYMA19G38690.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-149BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]