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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.19G199200.1.p | ||||||||
Common Name | GLYMA_19G199200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | Dof | ||||||||
Protein Properties | Length: 272aa MW: 30636.8 Da PI: 5.2872 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 115.7 | 1.9e-36 | 15 | 70 | 6 | 61 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC stntkfCyynnys +qPryfCk+CrryWtkGG+lrnvPvGgg+rk++++ Glyma.19G199200.1.p 15 PNCPRCGSTNTKFCYYNNYSSTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRSA 70 58**************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 9.0E-25 | 1 | 68 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.127 | 15 | 69 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.6E-31 | 15 | 69 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 17 | 53 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MMERGWKANN VEISPNCPRC GSTNTKFCYY NNYSSTQPRY FCKGCRRYWT KGGSLRNVPV 60 GGGCRKSRSA KYNKTFRQAN NSVGYSDDLM ASPNSVVSDA PSIDLAQVYA SFLNQKPDQA 120 VQTVRYPNEP DYYSCLLNST DFGHSALSEE ELGLIDCLHF HEQSTESHFG ESIQMYLFGF 180 NSIQNHQEYY SSSYDTTNNT NFELPPLPGE ETEISHGDML WSKSNSEMML DHALQASQPP 240 LFGPQSHDAD FIMGNCWSHF DLPRDASFST L* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.28634 | 0.0 | cotyledon |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00405 | DAP | Transfer from AT3G52440 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.19G199200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ857266 | 0.0 | DQ857266.1 Glycine max Dof16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028216325.1 | 0.0 | dof zinc finger protein DOF3.5-like | ||||
TrEMBL | A0A445FIX8 | 0.0 | A0A445FIX8_GLYSO; Dof zinc finger protein DOF3.5 | ||||
TrEMBL | I1NAU1 | 0.0 | I1NAU1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G38660.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1817 | 33 | 94 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52440.1 | 2e-51 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.19G199200.1.p |