PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G192400.1.p
Common NameGLYMA_19G192400, LOC100813781
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 189aa    MW: 20155.4 Da    PI: 4.6653
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G192400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.1e-192171155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                         + y+GVr+++ +g+Wv+eIr+p+    +  r++lg+f t+e+Aa a++ a+++l+g
  Glyma.19G192400.1.p 21 PVYRGVRRRS-SGKWVSEIREPK----KpNRIWLGTFATPEMAAIAYDVAALALKG 71
                         68*****888.8*********94....468***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-112171IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-202281IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-302281IPR001471AP2/ERF domain
PROSITE profilePS5103222.4452279IPR001471AP2/ERF domain
SMARTSM003803.2E-342285IPR001471AP2/ERF domain
PRINTSPR003675.1E-112334IPR001471AP2/ERF domain
CDDcd000181.31E-302381No hitNo description
PRINTSPR003675.1E-116181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MRSSNGTSSS RASNGNTGRH PVYRGVRRRS SGKWVSEIRE PKKPNRIWLG TFATPEMAAI  60
AYDVAALALK GKDAELNFPN SASSLPIPAS SAAHDIQMAA ALAATAVGAA NDALEGSQGG  120
NVSVSLAEEF SGGNLNHFVD EDLIFDMPNI LVNMAEGMLL SPPRFDNFAA TDYEYMDEDP  180
NLWGFPNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1520811274Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G192400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0896450.0BT089645.1 Soybean clone JCVI-FLGm-2B15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553587.11e-136ethylene-responsive transcription factor ERF024
SwissprotQ9SJR02e-57ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLI1NAK01e-135I1NAK0_SOYBN; Uncharacterized protein
STRINGGLYMA19G37670.11e-135(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.13e-38ERF family protein