![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.19G184500.1.p | ||||||||
Common Name | GLYMA_19G184500, LOC778084 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 331aa MW: 36610.8 Da PI: 8.1372 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.2 | 7.7e-18 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+d+++q+G+g +W + ++++g++R++k+c++rw++yl Glyma.19G184500.1.p 14 KGPWSPEEDAKLKDYIEQHGTGgNWIALPQKVGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 37.7 | 4.8e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++ Ed+++ +++ G++ W+ Ia+ ++ gRt++++k++w++ Glyma.19G184500.1.p 69 GQFSEAEDKIICSLFASIGSR-WSIIASQLP-GRTDNDIKNYWNT 111 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.493 | 9 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.6E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-13 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-16 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.49E-10 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 16.382 | 67 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-10 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 331 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDAKLKDYIE QHGTGGNWIA LPQKVGLKRC GKSCRLRWLN 60 YLRPNIKHGQ FSEAEDKIIC SLFASIGSRW SIIASQLPGR TDNDIKNYWN TKLKKKMMAM 120 NPSLQRKPQQ ITLLSILQSS AYSSPSSFRD SNNISYYHPH GSFSYSSNLL SGNNTSASAN 180 SFFQAQESFI DPTQKCQFKD SSNNSMFLFG GEATATATSC SSSDGSCNNQ ISHVIEPEFG 240 DASFVGGANN NIHPYSGVLE DNNTQKLMMF SNAGGSGSVS GWTDKQNGLL WEQNPLDYGL 300 DEIKQLISTN NSCNNFLFDD KKTQERVTYF * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-24 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.51815 | 0.0 | root |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.19G184500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | DQ902864 | 0.0 | DQ902864.1 Glycine max transcription factor MYBJ7 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006604580.1 | 0.0 | transcription factor RAX2 | ||||
Refseq | XP_028217434.1 | 0.0 | transcription factor RAX2-like | ||||
TrEMBL | A0A445FIE9 | 0.0 | A0A445FIE9_GLYSO; Transcription factor MYB36 | ||||
TrEMBL | I1NAB3 | 0.0 | I1NAB3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G36830.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G57620.1 | 3e-78 | myb domain protein 36 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.19G184500.1.p |
Entrez Gene | 778084 |