 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Glyma.19G164600.1.p |
Common Name | GLYMA_19G164600, LOC100802214 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
Family |
MYB |
Protein Properties |
Length: 292aa MW: 33110.9 Da PI: 5.066 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.19G164600.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 54.4 | 2.9e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT+eEd++l+++++ +G +W++ ++ g+ R++k+c++rw +yl
Glyma.19G164600.1.p 14 RGPWTPEEDQILINYINTYGHANWRALPKLAGLLRCGKSCRLRWINYL 61
89******************************99************97 PP
|
2 | Myb_DNA-binding | 47.6 | 3.9e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++T eE++ ++ ++++lG++ W++Ia+++ gRt++++k+ w+++l
Glyma.19G164600.1.p 67 RGNFTREEEDTIISLHEMLGNR-WSAIAARLS-GRTDNEIKNVWHTHL 112
89********************.*********.************986 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 292 aa
Download sequence Send
to blast |
MGRAPCCEKM GLKRGPWTPE EDQILINYIN TYGHANWRAL PKLAGLLRCG KSCRLRWINY 60 LRPDIKRGNF TREEEDTIIS LHEMLGNRWS AIAARLSGRT DNEIKNVWHT HLKKRLPQNY 120 QQSHHTKKRS KKQPPKLDAD ASKSNQDAKL EQQDPVNIHG SNSEDMMMPL SPPHCSSDMS 180 SSLTTSDNNS NVNIINNNHD MSLNVNDYDI DTPENNLALD EDFWSEVLSS DNSGVTSGFP 240 TLDYDQFQPM SPLVTEEGVL IDCSSSTCDD GMDFWCNVYS RAEEFTQLLE L*
|
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Fades out in old roots and leaves. {ECO:0000269|PubMed:24415840}. |
Uniprot | TISSUE SPECIFICITY: Expressed in imbibed seeds, hypocotyls, cotyledons, roots, seedlings, siliques and flowers. {ECO:0000269|PubMed:24415840}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | KC979136 | 0.0 | KC979136.1 Glycine max cultivar Jindou 21 MYB4-like protein mRNA, complete cds. |