PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G159500.1.p
Common NameGLYMA_19G159500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 371aa    MW: 42387.4 Da    PI: 5.2745
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G159500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.89.5e-35491402102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y+ +ed+++++++sw++ g sfvv+d++ f++++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g++
  Glyma.19G159500.1.p  49 FLTKTYDAVEDPTTSHIVSWNRGGASFVVWDPHAFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFLRGHR 129
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          ++l +i+r+k+
  Glyma.19G159500.1.p 130 HQLASIRRRKQ 140
                          *********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-3743132IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.9E-3445138IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.0E-5745138IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.9E-3149138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-194972IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-198799IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434088112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-19100112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MNYLYPVKEE YLESPPPSSS SPTTGVDESA MVPPPRPMEG LHEIGPPPFL TKTYDAVEDP  60
TTSHIVSWNR GGASFVVWDP HAFSRDLLPR YFKHNNFSSF VRQLNTYGFR KIDPDRWEFA  120
NEGFLRGHRH QLASIRRRKQ PSRPYSSSSS SQQAQGHCVE VGRFGLDEEV DRLRRDKHVL  180
MMELVRLRQQ QLNTRSYLQA MEERLRGTEI KQQQMMAFLA RALKNPTFIQ QLLQQKEKRK  240
ELEEAMSKKR RRPIEGGPSG VGEPSSGGEE GRSSVKVEPL VLGEYGFGVS ELEVLAMEMQ  300
GYGRGRREQE EEPEALESQE RLEKELDEGF WEELFSEGFE GELDIPTSQD QDEDVSVLAN  360
RFGYLGSSPK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-224713818120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237251KRKELEEAMSKKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.302040.0leaf| seed coat
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G159500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025982751.10.0heat stress transcription factor A-7a
RefseqXP_025982752.10.0heat stress transcription factor A-7a
SwissprotQ9LUH81e-124HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A445FH880.0A0A445FH88_GLYSO; Heat stress transcription factor A-6b
TrEMBLI1N9K50.0I1N9K5_SOYBN; Uncharacterized protein
STRINGGLYMA19G34210.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.12e-94heat shock transcription factor A6B