PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.19G155300.1.p | ||||||||
Common Name | GLYMA_19G155300, LOC100780422 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 589aa MW: 66391 Da PI: 5.7658 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.8 | 9.7e-14 | 427 | 474 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h ++ErrRR+++N++f Lr+++P +++K +iLe +++YIk+L+ Glyma.19G155300.1.p 427 TNHVMAERRRREKLNERFLILRSMVPFM-----MRMDKESILEDTIHYIKQLR 474 78*************************7.....5*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 8.7E-57 | 9 | 192 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 1.83E-16 | 423 | 485 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.00E-14 | 423 | 478 | No hit | No description |
PROSITE profile | PS50888 | 16.31 | 424 | 473 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-15 | 427 | 477 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.8E-11 | 427 | 473 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-14 | 430 | 479 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 589 aa Download sequence Send to blast |
MATPPNSRLH TMLRASVQSV QWTYSLFWQL CPQQGILTWG DGYYNGAIKT RKTVQAMEVS 60 TEEASLQRSE QLRELYESLS AEETINTQTR RPCAALSPED LTESEWFYLL CVSFSFHLGI 120 GLPGTAYARR QHLWLSGANE VDSKTFSRAI LAKSAHIQTV VCIPVLEGVV ELGTTDKIEE 180 DLNFIQHIKS FFIDQQPPPP TAKPALSEHS TSNLTSSYPL VIVPVTAAAT ANNVLIQNDM 240 NIVDKGEAII LNNNNNNTEA ELLADPNSNS FIPSELMELD HQLEEFGVGS PGDGSNHLDS 300 FPKEESMALC AAGLELLQLQ RPPAPAHPPT ENLAQGDTDT HYSQTVSSIL KKNSSRWWPD 360 SPSVNHPTDS FQSAFNKWKS DTDNHHHYFH ETVADGTSQG LLKYILFNVP YLHANRLKGT 420 GASSYETNHV MAERRRREKL NERFLILRSM VPFMMRMDKE SILEDTIHYI KQLREKIESL 480 EARERLRGKR RVREVEVSII ESEALLEVEC VHRERLLLDV MTMLRELGVE VMMVQSWVKD 540 DGVFVAEMRA KVKENGNGKK ASVVEVKNAL NQIIPHHEPY TLCSNDHF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 5e-21 | 9 | 192 | 9 | 192 | Transcription factor MYC3 |
4rqw_B | 5e-21 | 9 | 192 | 9 | 192 | Transcription factor MYC3 |
4rs9_A | 5e-21 | 9 | 192 | 9 | 192 | Transcription factor MYC3 |
4yz6_A | 5e-21 | 9 | 192 | 9 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 432 | 437 | ERRRRE |
2 | 433 | 438 | RRRREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.19G155300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003553458.1 | 0.0 | basic helix-loop-helix protein A | ||||
Refseq | XP_028217715.1 | 0.0 | basic helix-loop-helix protein A-like | ||||
Swissprot | E3SXU4 | 0.0 | BHLHW_PEA; Basic helix-loop-helix protein A | ||||
TrEMBL | A0A445FGY9 | 0.0 | A0A445FGY9_GLYSO; Basic helix-loop-helix protein A isoform A | ||||
TrEMBL | I1N9G7 | 0.0 | I1N9G7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G33770.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3637 | 32 | 49 |
Representative plant | OGRP5226 | 11 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09820.1 | 9e-95 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.19G155300.1.p |
Entrez Gene | 100780422 |
Publications ? help Back to Top | |||
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