PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G155300.1.p
Common NameGLYMA_19G155300, LOC100780422
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 589aa    MW: 66391 Da    PI: 5.7658
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G155300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.7e-14427474355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++h ++ErrRR+++N++f  Lr+++P        +++K +iLe +++YIk+L+
  Glyma.19G155300.1.p 427 TNHVMAERRRREKLNERFLILRSMVPFM-----MRMDKESILEDTIHYIKQLR 474
                          78*************************7.....5*****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.7E-579192IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.83E-16423485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-14423478No hitNo description
PROSITE profilePS5088816.31424473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-15427477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-11427473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-14430479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MATPPNSRLH TMLRASVQSV QWTYSLFWQL CPQQGILTWG DGYYNGAIKT RKTVQAMEVS  60
TEEASLQRSE QLRELYESLS AEETINTQTR RPCAALSPED LTESEWFYLL CVSFSFHLGI  120
GLPGTAYARR QHLWLSGANE VDSKTFSRAI LAKSAHIQTV VCIPVLEGVV ELGTTDKIEE  180
DLNFIQHIKS FFIDQQPPPP TAKPALSEHS TSNLTSSYPL VIVPVTAAAT ANNVLIQNDM  240
NIVDKGEAII LNNNNNNTEA ELLADPNSNS FIPSELMELD HQLEEFGVGS PGDGSNHLDS  300
FPKEESMALC AAGLELLQLQ RPPAPAHPPT ENLAQGDTDT HYSQTVSSIL KKNSSRWWPD  360
SPSVNHPTDS FQSAFNKWKS DTDNHHHYFH ETVADGTSQG LLKYILFNVP YLHANRLKGT  420
GASSYETNHV MAERRRREKL NERFLILRSM VPFMMRMDKE SILEDTIHYI KQLREKIESL  480
EARERLRGKR RVREVEVSII ESEALLEVEC VHRERLLLDV MTMLRELGVE VMMVQSWVKD  540
DGVFVAEMRA KVKENGNGKK ASVVEVKNAL NQIIPHHEPY TLCSNDHF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-2191929192Transcription factor MYC3
4rqw_B5e-2191929192Transcription factor MYC3
4rs9_A5e-2191929192Transcription factor MYC3
4yz6_A5e-2191929192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1432437ERRRRE
2433438RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G155300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553458.10.0basic helix-loop-helix protein A
RefseqXP_028217715.10.0basic helix-loop-helix protein A-like
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A445FGY90.0A0A445FGY9_GLYSO; Basic helix-loop-helix protein A isoform A
TrEMBLI1N9G70.0I1N9G7_SOYBN; Uncharacterized protein
STRINGGLYMA19G33770.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Representative plantOGRP52261116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.19e-95bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]