PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.19G141700.1.p | ||||||||
Common Name | GLYMA_19G141700, LOC100791806 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 668aa MW: 73466.4 Da PI: 6.3909 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.6 | 3.7e-07 | 253 | 273 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg Glyma.19G141700.1.p 253 PCPEFRK-GACRRGDMCEYAHG 273 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 3.58E-16 | 16 | 139 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 2.2E-9 | 20 | 126 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 4.4E-17 | 56 | 140 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 3.12E-13 | 57 | 147 | No hit | No description |
PROSITE profile | PS50297 | 17.9 | 58 | 133 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.14 | 58 | 88 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.861 | 93 | 128 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.0011 | 93 | 125 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 9.5E-6 | 248 | 274 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.981 | 253 | 275 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-4 | 253 | 273 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-4 | 281 | 311 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 64 | 283 | 306 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 668 aa Download sequence Send to blast |
MNHLSLDTED SLASLLLELA ANNDVSGFKR LIECEPSSID EVGLWYGRHK ESKKMVNEQR 60 TPLMVAATYG SIDVMTLILS LSEADVNRSS GLDKSTALHC AASGGSENAV DAVKLLLEAG 120 ADRNSVDANG RRPGDVIVSP PKLDYVKKSL EELLGSDDWS LLRVMRSTCN GCSAEDLKMK 180 TNEVSEKKEY PVDLSLPDIK NSIYSSDEFR MYSFKVRPCS RAYSHDWTEC PFVHPGENAR 240 RRDPRKFHYS CVPCPEFRKG ACRRGDMCEY AHGVFECWLH PAQYRTRLCK DGTNCARRVC 300 FFAHTNEELR PLYVSTGSAV PSPRSSASSA MDFVAAISPS SMSVMSPSPF TPPMSPSSAS 360 IAWPQPNIPA LHLPGSNFHS SRLRSSLNAR DFSVDDFDLL LPDYDHHHHQ QQQQQQFLNE 420 LSCLSPHAMN CNTMNRSGRM KPLTPSNLDD LFSAESSSPR YADPALASAV FSPTHKSAVF 480 NQFQHQQSML APLNTNFASK NFEHPLLQAS LGMSPRNVEP ISPMGSRISM LAQREKQQFR 540 SLSFQELGSN SAAASADSWS KWGSPNVKLD WPVGAGEVGK LRRSSSFELG NNGEEPDLSW 600 VQSLVKESPA EVKDKLATTV SYVAAAAAGS SSEGSNISTQ MESVVDHAVL GAWLEQMQLD 660 HLVAQQN* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.28626 | 0.0 | cotyledon| leaf| root| stem |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.19G141700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006604367.1 | 0.0 | zinc finger CCCH domain-containing protein 30 | ||||
Refseq | XP_006604368.1 | 0.0 | zinc finger CCCH domain-containing protein 30 | ||||
Refseq | XP_014627434.1 | 0.0 | zinc finger CCCH domain-containing protein 30 | ||||
Refseq | XP_014627435.1 | 0.0 | zinc finger CCCH domain-containing protein 30 | ||||
Refseq | XP_028216876.1 | 0.0 | zinc finger CCCH domain-containing protein 30-like | ||||
Refseq | XP_028216877.1 | 0.0 | zinc finger CCCH domain-containing protein 30-like | ||||
Refseq | XP_028216878.1 | 0.0 | zinc finger CCCH domain-containing protein 30-like | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A0B2R2U1 | 0.0 | A0A0B2R2U1_GLYSO; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | K7MYD7 | 0.0 | K7MYD7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G32340.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1732 | 33 | 95 | Representative plant | OGRP709 | 15 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.19G141700.1.p |
Entrez Gene | 100791806 |
Publications ? help Back to Top | |||
---|---|---|---|
|