PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G140400.1.p
Common NameGLYMA_19G140400, LOC100790226
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 293aa    MW: 32320.7 Da    PI: 8.4969
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G140400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00056265286323
                          ETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                          Cp+C+k F ++ +L+ H  + H
  Glyma.19G140400.1.p 265 CPKCSKGFLDPVSLVEHVERdH 286
                          *****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183103.53E-12459No hitNo description
PROSITE profilePS510397.4161059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.108.6E-101154IPR000058Zinc finger, AN1-type
PfamPF014283.8E-131351IPR000058Zinc finger, AN1-type
SMARTSM001540.00271352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.2E-1091149IPR000058Zinc finger, AN1-type
SuperFamilySSF1183104.19E-893143No hitNo description
PROSITE profilePS510397.79198151IPR000058Zinc finger, AN1-type
PfamPF014282.8E-8101141IPR000058Zinc finger, AN1-type
SMARTSM001540.085101142IPR000058Zinc finger, AN1-type
SMARTSM003550.034227250IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280229250IPR007087Zinc finger, C2H2
SMARTSM0035514263286IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280265286IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGTPEFPHLG KHCSVSYCKQ LDFLPFTCDR CNQVYCLLHR GYIKHKCTKA NKQDVTVAIC  60
PLCAKGVRLI PDQDPNITWD NHVNVDCDPS NYEKVTEKRK CPAPGCKEVL VFSNTIKCRD  120
CLKDHCLKHR FGPDHKCSGP QKLETSFSFM GLLNRSRKEG PKPNLASTTS SKWSSSFLNV  180
ASNIRASAET GMSKLSDEIN QVWQAATTRD GMGQSSGSGN RNDHQVEQCP QCRSKFSSVT  240
ALVDHVQQVH ERNGNRLGVK KIDACPKCSK GFLDPVSLVE HVERDHGGGS GA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.371800.0root
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G140400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352740.0AC235274.1 Glycine max strain Williams 82 clone GM_WBb0047E24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003554178.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
RefseqXP_028217298.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
SwissprotQ0D5B91e-114SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A0B2QXE10.0A0A0B2QXE1_GLYSO; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLI1N9150.0I1N915_SOYBN; Uncharacterized protein
STRINGGLYMA19G32220.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58643351
Representative plantOGRP19091520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-114C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]