PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.19G140400.1.p | ||||||||
Common Name | GLYMA_19G140400, LOC100790226 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 293aa MW: 32320.7 Da PI: 8.4969 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.2 | 0.00056 | 265 | 286 | 3 | 23 |
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 Cp+C+k F ++ +L+ H + H Glyma.19G140400.1.p 265 CPKCSKGFLDPVSLVEHVERdH 286 *****************99888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118310 | 3.53E-12 | 4 | 59 | No hit | No description |
PROSITE profile | PS51039 | 7.416 | 10 | 59 | IPR000058 | Zinc finger, AN1-type |
Gene3D | G3DSA:4.10.1110.10 | 8.6E-10 | 11 | 54 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 3.8E-13 | 13 | 51 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 0.0027 | 13 | 52 | IPR000058 | Zinc finger, AN1-type |
Gene3D | G3DSA:4.10.1110.10 | 1.2E-10 | 91 | 149 | IPR000058 | Zinc finger, AN1-type |
SuperFamily | SSF118310 | 4.19E-8 | 93 | 143 | No hit | No description |
PROSITE profile | PS51039 | 7.791 | 98 | 151 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 2.8E-8 | 101 | 141 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 0.085 | 101 | 142 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00355 | 0.034 | 227 | 250 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 229 | 250 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 14 | 263 | 286 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 265 | 286 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MGTPEFPHLG KHCSVSYCKQ LDFLPFTCDR CNQVYCLLHR GYIKHKCTKA NKQDVTVAIC 60 PLCAKGVRLI PDQDPNITWD NHVNVDCDPS NYEKVTEKRK CPAPGCKEVL VFSNTIKCRD 120 CLKDHCLKHR FGPDHKCSGP QKLETSFSFM GLLNRSRKEG PKPNLASTTS SKWSSSFLNV 180 ASNIRASAET GMSKLSDEIN QVWQAATTRD GMGQSSGSGN RNDHQVEQCP QCRSKFSSVT 240 ALVDHVQQVH ERNGNRLGVK KIDACPKCSK GFLDPVSLVE HVERDHGGGS GA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.37180 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in environmental stress response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.19G140400.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235274 | 0.0 | AC235274.1 Glycine max strain Williams 82 clone GM_WBb0047E24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003554178.1 | 0.0 | zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 | ||||
Refseq | XP_028217298.1 | 0.0 | zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like | ||||
Swissprot | Q0D5B9 | 1e-114 | SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 | ||||
TrEMBL | A0A0B2QXE1 | 0.0 | A0A0B2QXE1_GLYSO; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 | ||||
TrEMBL | I1N915 | 0.0 | I1N915_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G32220.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5864 | 33 | 51 | Representative plant | OGRP1909 | 15 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41835.1 | 1e-114 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.19G140400.1.p |
Entrez Gene | 100790226 |
Publications ? help Back to Top | |||
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