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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.19G139100.1.p | ||||||||
Common Name | GLYMA_19G139100, LOC102663358 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 659aa MW: 75766.9 Da PI: 6.7069 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 31.3 | 6.5e-10 | 61 | 134 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +Y +YA+++GF + +++skk r+g+++ +vCs +++ + + C a+++++++kdg++++++ l H+Hel Glyma.19G139100.1.p 61 YYTKYANQMGFGIMTRTSKKG-RDGKVKYLILVCSGITRSDAAR-------------KQYCAARINLTLRKDGTYRINSATLGHSHEL 134 8*************9999887.8888********8655444433.............569***************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.7E-6 | 61 | 134 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.5E-27 | 236 | 330 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.348 | 520 | 558 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 5.4E-6 | 532 | 555 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.9E-6 | 533 | 560 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 659 aa Download sequence Send to blast |
MGELCHSRAP LDINSSGSEE NLVSISPEEI KLEPISFDGN DACPVPRPGM VFSSEAEARL 60 YYTKYANQMG FGIMTRTSKK GRDGKVKYLI LVCSGITRSD AARKQYCAAR INLTLRKDGT 120 YRINSATLGH SHELGSHHLL SSDIDTRGKR TLDQEVVDMG VKRISDKNEC RYYLQKERHL 180 IGENGDGEAL QKYLVRMQEQ DRNFFYVIDL DDFFCVRNVF WADGKSRAAY ESFGDVVIVD 240 TTCLSNRYKV PLVTFVGVNH HGQSVLFGCG LLSYEDSESF AWLFQSLLHC MSDVPPQGII 300 TDHCCKTMQK AVETVYPSTR HRWCLSNIME KLPQLIHGYA NYKSLRDHLQ NVVYDTPTIS 360 EFEQKWKKIV EDFDLKDNKW LKELFLERHR WAPSFVRGEF WAGMSINPHN ESMHAFFDGY 420 VSRLTTLKQF VDQYDNALQY KAEKEYVADI HSSSNSQACV TKSPIERQFQ AAYTHAKFLE 480 VQHEFVGKAD CNVSVASDDG SIFHYNVIED GIIDDKPKES VVEVIYNRVD CDVKCSCHLF 540 EFRGILCRHS LAVLSQERVK EVPCKYILDR WRKNIRRKYA YIKTSYGVQH FEPHVQRLEL 600 LCNQFNSIAA VAAEFEDTSS FVKDNLCNLK EKLEAWTTLL RNSSQVDVEK CNYMMDWE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.19G139100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006604361.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 | ||||
Refseq | XP_028217084.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6-like | ||||
TrEMBL | A0A445FG72 | 0.0 | A0A445FG72_GLYSO; Protein FAR1-RELATED SEQUENCE 6 isoform A | ||||
TrEMBL | K7MYC0 | 0.0 | K7MYC0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G32051.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 1e-96 | FAR1-related sequence 6 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.19G139100.1.p |
Entrez Gene | 102663358 |