PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.19G138000.3.p | ||||||||
Common Name | GLYMA_19G138000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | AP2 | ||||||||
Protein Properties | Length: 416aa MW: 46142.6 Da PI: 9.0693 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.8 | 2.7e-13 | 60 | 116 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ ++k+ g ++ +e Aa+a++ a++k++g Glyma.19G138000.3.p 60 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 116 57*******************6666777775555599******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.8E-9 | 60 | 116 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-15 | 60 | 125 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.518 | 61 | 124 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.3E-19 | 61 | 130 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.8E-12 | 61 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-5 | 62 | 73 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-5 | 106 | 126 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MASSSSDPGK SAETSEAAVV VANDQLLLYR GLKKAKKERG CTAKERISKM PPCAAGKRSS 60 IYRGVTRHRW TGRYEAHLWD KSTWNQNQNK KGKQGAYDDE EAAARAYDLA ALKYWGPGTL 120 INFPVTDYTR DLEEMQNVSR EEYLASLRRK SSGFSRGLAK YRGLSSRWDP SYGRMSGSDY 180 FNSMHYGAGD DSAAESEYVS GFCIERKIDL TSHIKWWGSN KSRHSDAGTR LSEEKKLGSA 240 GDICIEIKQL EQKVQPTAPY QMPQLGRPQN EKKHRSSSVS ALSILSQSAA YKSLQEKASK 300 TLENIIDNDE NENKNTINKL DHGKAVEKPS NHDGGNDRLD IATGMSGTMS LQRNVYPLTP 360 FLSAPLLTAY NTVDPLVDPV LWTSLVPMLP AGLSHTAEVT KTETSSTYTM FRPEE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.39006 | 0.0 | meristem| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.19G138000.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031074 | 0.0 | KT031074.1 Glycine max clone HN_CCL_189 AP2-EREBP transcription factor (Glyma03g29240.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003554171.1 | 0.0 | AP2-like ethylene-responsive transcription factor At2g41710 isoform X1 | ||||
Refseq | XP_028216870.1 | 0.0 | AP2-like ethylene-responsive transcription factor At2g41710 isoform X2 | ||||
Swissprot | Q8GWK2 | 1e-165 | AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710 | ||||
TrEMBL | A0A0R0EM32 | 0.0 | A0A0R0EM32_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G31960.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41710.1 | 1e-152 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.19G138000.3.p |