PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.19G132600.1.p | ||||||||
Common Name | GLYMA_19G132600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 118aa MW: 13412.4 Da PI: 8.8932 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38 | 3e-12 | 62 | 114 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR+++N+ + Lr llP + + kK+s +++ ++ +YI +Lq Glyma.19G132600.1.p 62 KKLSHNASERDRRKKVNNLVSSLRLLLPVeD---QTKKMSIPATVSRVLKYIPELQ 114 6789*************************66...8888***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.021 | 61 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.2E-10 | 62 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-9 | 62 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.76E-9 | 62 | 116 | No hit | No description |
SuperFamily | SSF47459 | 1.44E-11 | 62 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0090575 | Cellular Component | RNA polymerase II transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MVALFSPTVF STKGWLLEEE PLSYDVSSKN SFPYQFYSLQ TQIEVEIERS TAPSPDDPAM 60 VKKLSHNASE RDRRKKVNNL VSSLRLLLPV EDQTKKMSIP ATVSRVLKYI PELQHQM* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.35490 | 1e-117 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.19G132600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031101 | 1e-114 | KT031101.1 Glycine max clone HN_CCL_45 bHLH transcription factor (Glyma03g28630.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006604330.2 | 2e-80 | transcription factor ORG2, partial | ||||
TrEMBL | K7MY65 | 1e-79 | K7MY65_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G31361.1 | 2e-80 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2402 | 33 | 79 | Representative plant | OGRP2826 | 11 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 3e-21 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.19G132600.1.p |