PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G130200.1.p
Common NameGLYMA_19G130200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 460aa    MW: 50717.8 Da    PI: 8.9199
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G130200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.11.1e-09172214345
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                          + k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Glyma.19G130200.1.p 172 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 214
                          568899************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.0E-8165217No hitNo description
SMARTSM003381.8E-7170233IPR004827Basic-leucine zipper domain
PfamPF077166.6E-7170216IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415172216IPR004827Basic-leucine zipper domain
CDDcd147084.01E-21174226No hitNo description
SuperFamilySSF579596.88E-7174217No hitNo description
PROSITE patternPS000360177192IPR004827Basic-leucine zipper domain
PfamPF141446.9E-30257331IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MGSRSRTVNV NTKDTNKVLN GMPSYAPPLP SSNSIAMEAT NVHPSRISEF GTLEQSLGFR  60
VEDTINLSRN PMFNQMKSNS QALGADIQFG ALNKSIATSD INLSAAIAGS QALVLQKDSQ  120
PTLASTSAGR ENWGETNLAD ASPRTDTSTD DTEDKNQRPE RGESSGSKDK SDQKTLRRLA  180
QNREAARKSR LRKKAYVQQL ESSRLKLTQL EQELQRARQQ GIFISSTGDQ AQSMSGNGAM  240
AFDVEYARWL EEHNRQTNEL RAAINSHAGD IELRTIVDNF MTQFDDIFRL KGIAAKADVF  300
HILSGMWKTP AERCFMWIGG FRSSELLKLL ESQLEPLTEQ QLMGIYNLQQ SSQQAEDALS  360
QGMDALQQSL SETLANGSPS TSGSSGNVAS YMGQMAMAMG KLGTLDGFLR QADNLRQQTL  420
QQMLRILTTR QSARALLAIS DYFSRLRALS SLWLARPRE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.360370.0cotyledon| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G130200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4026090.0AF402609.1 Phaseolus vulgaris TGA-type basic leucine zipper protein TGA2.2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001336398.10.0putative bZIP domain class transcription factor isoform 2
RefseqNP_001336401.10.0putative bZIP domain class transcription factor isoform 2
RefseqNP_001336402.10.0putative bZIP domain class transcription factor isoform 2
RefseqXP_028218102.10.0transcription factor TGA2.3-like isoform X2
RefseqXP_028218103.10.0transcription factor TGA2.3-like isoform X2
RefseqXP_028218104.10.0transcription factor TGA2.3-like isoform X2
SwissprotO241600.0TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A445FFY00.0A0A445FFY0_GLYSO; TGACG-sequence-specific DNA-binding protein TGA-2.1 isoform A
TrEMBLI1N8S20.0I1N8S2_SOYBN; Uncharacterized protein
STRINGGLYMA19G31050.50.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14703494
Representative plantOGRP7221667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-137TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Liao Y, et al.
    Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis.
    Planta, 2008. 228(2): p. 225-40
    [PMID:18365246]